Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031527.1

Orthogroup ID

OG0000923

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1275

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031527.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 883 bp

tgatccattgggatttataacggccccaacagcacagctgaatagaaaacctgctccattcatggcagctttctcctcgcaagggccaaacatgctcactcctcagatccttaagcctgatatcactgctcctggtgtaaatatcatagctgcatacacccaagcaaaaagccctacaggacaaagctatgataaacgtaggattccgtttgttactgaatctggcacctccatgtcttgccctcatgtagctggagttgtaggccttctgaagacgctctaccctgactggagttcatctgcaataaaatctgcaatcatgacaactgcaagaacgagggacaacactgtgaatccaatgcggaatggctcgttcattaaagcaacgccattcaattatgggcatggtcatataagaccaaatcgtgccatggatcctggcttgatctatgacctaaacatcaatgattacctagactttctttgtgtcattggctataacaagacaatgatgcaacttttctctgaagctccttataaatgccccaggtcagccagtcttgttgacttcaattacccttcaataacagtccctgatttgtctggctcagtcactgtgacaagaagagtgaagaatgttggttctcctagaggggccacatatgcagtccgaattcgcgaaccagttggaatttcagtatcagtggagcctaatatcttaaagttcgataaaataggtgaagagaaaagtttcaaggtaaccctgaaagctaagagacctggtgcagctaagaactatgtgtttggagggcttatttggtcggatggcaaacactatgtaaggagtccaatagtagtttcctctgctgctggtgctgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009888 GO:0010073 GO:0010074 GO:0016787 GO:0017171 GO:0019538 GO:0019827 GO:0032501 GO:0032502 GO:0043170 GO:0044238 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0098727 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

293

Amino Acids

31.79

Weight (kDa)

9.78

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59810
fragaria_vesca	FvH4_3g00161 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42041 FvH4_3g42350
malus_domestica	MD03G1039300.v1.1 MD10G1341300.v1.1 MD11G1039600.v1.1 MD14G1139100.v1.1
prunus_persica	Prupe.4G001800_v2.0.a1 Prupe.6G031400_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1
pyrus_communis	pycom03g03030 pycom11g03350 pycom11g03360 pycom11g03370 pycom17g11100
rosa_chinensis	RchiOBHm_Chr5g0000221 RchiOBHm_Chr5g0075241 RchiOBHm_Chr5g0075251
rosa_laevigata	RLG00000030851 RLG00000036541 RLG00000036542
rosa_multiflora	Rmu_co8057730.1_g000001 Rmu_co8132088.1_g000001 Rmu_sc0000770.1_g000063 Rmu_sc0021936.1_g000001 Rmu_sc0031527.1_g000001 Rmu_ssc0000243.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006310 Rroxscaffold_1G00075880 Rroxscaffold_3G00267190
rosa_rugosa	Rorug04G0382600 Rorug05G0437400 Rorug05G0437500 Rorug05G0437600 Rorug05G0437700 Rorug05G0437800
rosa_samantha	Rh5AG001500 Rh5AG494500 Rh5AG494600 Rh5BG002900 Rh5BG516100 Rh5BG516200 Rh5CG001800 Rh5CG539900 Rh5CG540000 Rh5DG001700 Rh5DG528800 Rh5DG528900
rosa_wichuraiana	Rw5G000200 Rw5G045880 Rw5G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	18, 538
Acc36I	ACCTGC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	225
AccII	CGCG	1 cut(s)	679
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	3 cut(s)	101, 429, 442
AcsI	RAATTY	2 cut(s)	673, 691
AcuI	CTGAAG	2 cut(s)	291, 547
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	111
AgsI	TTSAA	4 cut(s)	395, 572, 583, 755
AjnI	CCWGG	4 cut(s)	131, 437, 546, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	8 cut(s)	38, 69, 150, 187, 252, 531, 771, 789
AluI	AGCT	8 cut(s)	38, 69, 150, 187, 252, 531, 771, 789
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	3 cut(s)	101, 429, 442
AlwNI	CAGNNNCTG	2 cut(s)	594, 615
AoxI	GGCC	4 cut(s)	22, 84, 263, 655
ApeKI	GCWGC	4 cut(s)	66, 150, 786, 867
ApoI	RAATTY	2 cut(s)	673, 691
Asp700I	GAANNNNTTC	1 cut(s)	750
AspS9I	GGNCC	3 cut(s)	23, 84, 655
AsuHPI	GGTGA	1 cut(s)	750
BamHI	GGATCC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	225
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	78, 137, 798, 854
BccI	CCATC	1 cut(s)	819
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	4 cut(s)	133, 439, 548, 781
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	2 cut(s)	474, 649
BfmI	CTRYAG	1 cut(s)	175
BfrI	CTTAAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	67, 151, 787, 868
BlsI	GCNGC	4 cut(s)	68, 152, 788, 869
Bme1390I	CCNGG	4 cut(s)	133, 439, 548, 781
BmgT120I	GGNCC	3 cut(s)	23, 84, 655
BmiI	GGNNCC	5 cut(s)	25, 227, 436, 656, 709
BmrFI	CCNGG	4 cut(s)	133, 439, 548, 781
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	2 cut(s)	274, 311
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	2 cut(s)	430, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	294, 556, 684
BseBI	CCWGG	4 cut(s)	133, 439, 548, 781
BseDI	CCNNGG	2 cut(s)	430, 546
BseGI	GGATG	1 cut(s)	830
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	117, 622
BseNI	ACTGG	3 cut(s)	294, 556, 684
BseRI	GAGGAG	2 cut(s)	65, 91
BseXI	GCAGC	4 cut(s)	78, 137, 798, 854
BsgI	GTGCAG	1 cut(s)	805
Bsh1236I	CGCG	1 cut(s)	679
BshFI	GGCC	4 cut(s)	24, 86, 265, 657
BshNI	GGYRCC	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	354, 576
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	2 cut(s)	354, 576
BsnI	GGCC	4 cut(s)	24, 86, 265, 657
Bso31I	GGTCTC	1 cut(s)	770
Bsp143I	GATC	4 cut(s)	2, 106, 434, 445
Bsp19I	CCATGG	1 cut(s)	430
Bsp68I	TCGCGA	1 cut(s)	679
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	4 cut(s)	24, 86, 265, 657
BspCNI	CTCAG	2 cut(s)	116, 621
BspFNI	CGCG	1 cut(s)	679
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	5 cut(s)	25, 227, 436, 656, 709
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	101, 429, 442
BspT107I	GGYRCC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	770
BsrI	ACTGG	3 cut(s)	294, 556, 684
BssECI	CCNNGG	2 cut(s)	430, 546
BssMI	GATC	4 cut(s)	2, 106, 434, 445
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	4 cut(s)	133, 439, 548, 781
Bst4CI	ACNGT	3 cut(s)	350, 590, 617
Bst6I	CTCTTC	2 cut(s)	620, 736
BstAFI	CTTAAG	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	103, 608, 772, 790
BstDSI	CCRYGG	1 cut(s)	430
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	830
BstFNI	CGCG	1 cut(s)	679
BstKTI	GATC	4 cut(s)	5, 109, 437, 448
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	4 cut(s)	2, 106, 434, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 92, 663, 873
BstNI	CCWGG	4 cut(s)	133, 439, 548, 781
BstNSI	RCATGY	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	4 cut(s)	131, 437, 546, 779
BstSFI	CTRYAG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	4 cut(s)	78, 137, 798, 854
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	106, 434
BstYI	RGATCY	2 cut(s)	106, 434
BsuRI	GGCC	4 cut(s)	24, 86, 265, 657
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	830
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	4 cut(s)	124, 346, 613, 709
BtuMI	TCGCGA	1 cut(s)	679
BveI	ACCTGC	1 cut(s)	59
CaiI	CAGNNNCTG	2 cut(s)	594, 615
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	23, 84, 655
CseI	GACGC	1 cut(s)	284
CsiI	ACCWGGT	1 cut(s)	779
CviAII	CATG	7 cut(s)	62, 92, 233, 246, 320, 405, 431
DdeI	CTNAG	4 cut(s)	103, 608, 772, 790
DpnI	GATC	4 cut(s)	4, 108, 436, 447
DpnII	GATC	4 cut(s)	2, 106, 434, 445
Eam1104I	CTCTTC	2 cut(s)	620, 736
EarI	CTCTTC	2 cut(s)	620, 736
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	770
Eco32I	GATATC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	291, 547
Eco91I	GGTNACC	1 cut(s)	758
EcoO65I	GGTNACC	1 cut(s)	758
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	4 cut(s)	131, 437, 546, 779
EcoRV	GATATC	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	7 cut(s)	65, 95, 236, 249, 323, 408, 434
FaqI	GGGAC	2 cut(s)	354, 576
FatI	CATG	7 cut(s)	61, 91, 232, 245, 319, 404, 430
FauNDI	CATATG	1 cut(s)	662
Fnu4HI	GCNGC	4 cut(s)	67, 151, 787, 868
FokI	GGATG	1 cut(s)	837
Fsp4HI	GCNGC	4 cut(s)	67, 151, 787, 868
FspBI	CTAG	2 cut(s)	474, 649
GluI	GCNGC	4 cut(s)	67, 151, 787, 868
GsuI	CTGGAG	2 cut(s)	274, 311
HaeIII	GGCC	4 cut(s)	24, 86, 265, 657
HgaI	GACGC	1 cut(s)	284
Hin1II	CATG	7 cut(s)	65, 95, 236, 249, 323, 408, 434
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HinfI	GANTC	4 cut(s)	203, 219, 353, 845
HphI	GGTGA	1 cut(s)	750
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	5 cut(s)	106, 271, 527, 672, 824
Hpy188III	TCNNGA	2 cut(s)	320, 678
Hpy8I	GTNNAC	1 cut(s)	566
HpyAV	CCTTC	2 cut(s)	276, 589
HpyCH4III	ACNGT	3 cut(s)	350, 590, 617
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	7 cut(s)	153, 303, 315, 330, 515, 666, 786
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 92, 663, 873
HpyF3I	CTNAG	4 cut(s)	103, 608, 772, 790
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	7 cut(s)	65, 95, 236, 249, 323, 408, 434
Kzo9I	GATC	4 cut(s)	2, 106, 434, 445
LmnI	GCTCC	4 cut(s)	59, 134, 536, 707
Lsp1109I	GCAGC	4 cut(s)	78, 137, 798, 854
LweI	GCATC	1 cut(s)	502
MabI	ACCWGGT	1 cut(s)	779
MaeI	CTAG	2 cut(s)	474, 649
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	4 cut(s)	212, 611, 617, 758
MalI	GATC	4 cut(s)	4, 108, 436, 447
MboI	GATC	4 cut(s)	2, 106, 434, 445
MboII	GAAGA	4 cut(s)	284, 637, 644, 753
MflI	RGATCY	2 cut(s)	106, 434
MluCI	AATT	4 cut(s)	395, 572, 673, 691
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	2 cut(s)	668, 802
MnlI	CCTC	8 cut(s)	86, 112, 239, 253, 331, 645, 801, 872
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	112, 379, 720
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	111
MspR9I	CCNGG	4 cut(s)	133, 439, 548, 781
MvaI	CCWGG	4 cut(s)	133, 439, 548, 781
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	4 cut(s)	30, 92, 663, 873
NcoI	CCATGG	1 cut(s)	430
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	4 cut(s)	2, 106, 434, 445
NlaIII	CATG	7 cut(s)	65, 95, 236, 249, 323, 408, 434
NlaIV	GGNNCC	5 cut(s)	25, 227, 436, 656, 709
NmuCI	GTSAC	2 cut(s)	611, 617
NruI	TCGCGA	1 cut(s)	679
NspI	RCATGY	1 cut(s)	95
PagI	TCATGA	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	203, 219, 353
PkrI	GCNGC	4 cut(s)	68, 152, 788, 869
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
PsiI	TTATAA	2 cut(s)	18, 538
Psp6I	CCWGG	4 cut(s)	131, 437, 546, 779
PspEI	GGTNACC	1 cut(s)	758
PspGI	CCWGG	4 cut(s)	131, 437, 546, 779
PspN4I	GGNNCC	5 cut(s)	25, 227, 436, 656, 709
PspPI	GGNCC	3 cut(s)	23, 84, 655
PstNI	CAGNNNCTG	2 cut(s)	594, 615
PsuI	RGATCY	2 cut(s)	106, 434
PvuII	CAGCTG	1 cut(s)	38
RruI	TCGCGA	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	112, 379, 720
SatI	GCNGC	4 cut(s)	67, 151, 787, 868
Sau3AI	GATC	4 cut(s)	2, 106, 434, 445
Sau96I	GGNCC	3 cut(s)	23, 84, 655
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	4 cut(s)	133, 439, 548, 781
SexAI	ACCWGGT	1 cut(s)	779
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	4 cut(s)	395, 572, 673, 691
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	2 cut(s)	474, 649
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	4 cut(s)	131, 437, 546, 779
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	350, 590, 617
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	727
TasI	AATT	4 cut(s)	395, 572, 673, 691
TfiI	GAWTC	3 cut(s)	203, 219, 353
Tru1I	TTAA	3 cut(s)	112, 379, 720
Tru9I	TTAA	3 cut(s)	112, 379, 720
TscAI	CASTG	4 cut(s)	131, 353, 620, 709
TseFI	GTSAC	2 cut(s)	611, 617
TseI	GCWGC	4 cut(s)	66, 150, 786, 867
Tsp45I	GTSAC	2 cut(s)	611, 617
TspDTI	ATGAA	3 cut(s)	50, 286, 365
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	4 cut(s)	131, 353, 620, 709
Vha464I	CTTAAG	1 cut(s)	111
XapI	RAATTY	2 cut(s)	673, 691
XceI	RCATGY	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	474, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.