Rorug05G0437500

subtilisin-like protease

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
60773512 .. 60775155
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0437500.1

Sequence Viewer

Length: 381 bp
ATGGGCACTGAAGCTTTTGAAATGAGTCTTGTATTGGTGCTCTTGATGATCCTTACATTCTCAGCAACATCTTCAGCCACCGATCATATCTACAATGTAGGAGACAATGTCCCCTTGTTCGTCAACAAAATCGGTCCTTTGAACAACCCCAGCGAGACCTATCAGTACTATGATTTGCCTTTCTGCCTTCCAGATCCAGTAATTCAAAAGAAAGAATCCATTGGGGAAGTTTTGTGTGGTGATCGTTTGACCAACAGCTTATATCAGTTGAATTTCCGGCAGAACAAAAATGAGGAGAGACTGTGCCAGAAGAAGCTTAGAGTTTCTGAAGTTCGGAAGTTCAGGGATGCTATCCTTATTTTGTGTAATAGTAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.38

Weight (kDa)

6.56

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 53 - 118 4.1e-16 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 43, 188
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 3 cut(s) 30, 57, 348
AfaI GTAC 1 cut(s) 167
AgsI TTSAA 4 cut(s) 20, 142, 206, 271
AluBI AGCT 3 cut(s) 14, 258, 316
AluI AGCT 3 cut(s) 14, 258, 316
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 96, 149, 292
AlwI GGATC 2 cut(s) 43, 188
ApoI RAATTY 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 42
BcoDI GTCTC 3 cut(s) 96, 149, 292
BmcAI AGTACT 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmsI GCATC 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 149
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 287, 317
Bse1I ACTGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 3 cut(s) 96, 149, 292
BsmFI GGGAC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 8, 42
Bsp143I GATC 4 cut(s) 48, 82, 193, 241
BspCNI CTCAG 1 cut(s) 74
BspPI GGATC 2 cut(s) 43, 188
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 197
BssMI GATC 4 cut(s) 48, 82, 193, 241
Bst4CI ACNGT 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 61, 317
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 4 cut(s) 51, 85, 196, 244
BstMAI GTCTC 3 cut(s) 96, 149, 292
BstMBI GATC 4 cut(s) 48, 82, 193, 241
BstSLI GKGCMC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 166
CviJI RGCY 4 cut(s) 14, 77, 258, 316
CviKI_1 RGCY 4 cut(s) 14, 77, 258, 316
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 61, 317
DpnI GATC 4 cut(s) 50, 84, 195, 243
DpnII GATC 4 cut(s) 48, 82, 193, 241
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 3 cut(s) 30, 57, 348
FaiI YATR 4 cut(s) 87, 171, 262, 379
FaqI GGGAC 1 cut(s) 95
FokI GGATG 1 cut(s) 359
GsaI CCCAGC 1 cut(s) 153
HapII CCGG 1 cut(s) 277
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 12, 314
HinfI GANTC 2 cut(s) 25, 215
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 328, 336
Hpy188III TCNNGA 2 cut(s) 43, 191
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 303
HpyF3I CTNAG 2 cut(s) 61, 317
Kzo9I GATC 4 cut(s) 48, 82, 193, 241
LpnPI CCDG 6 cut(s) 163, 204, 210, 290, 320, 328
LweI GCATC 1 cut(s) 337
MalI GATC 4 cut(s) 50, 84, 195, 243
MboI GATC 4 cut(s) 48, 82, 193, 241
MboII GAAGA 2 cut(s) 63, 322
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 8, 42
MluCI AATT 2 cut(s) 201, 271
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 1 cut(s) 286
MspI CCGG 1 cut(s) 277
NdeII GATC 4 cut(s) 48, 82, 193, 241
PfeI GAWTC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 107
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
Sau3AI GATC 4 cut(s) 48, 82, 193, 241
Sau96I GGNCC 1 cut(s) 134
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 2 cut(s) 8, 42
SetI ASST 4 cut(s) 16, 161, 260, 318
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 134
Sse9I AATT 2 cut(s) 201, 271
TaaI ACNGT 1 cut(s) 303
TaqII GACCGA 1 cut(s) 122
TasI AATT 2 cut(s) 201, 271
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 215
TscAI CASTG 1 cut(s) 13
TspRI CASTG 1 cut(s) 13
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 271
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.