PA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 40 |
| AcsI | RAATTY | 1 cut(s) | 159 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 94 |
| AluBI | AGCT | 2 cut(s) | 109, 211 |
| AluI | AGCT | 2 cut(s) | 109, 211 |
| AoxI | GGCC | 2 cut(s) | 40, 54 |
| ApeKI | GCWGC | 2 cut(s) | 27, 109 |
| ApoI | RAATTY | 1 cut(s) | 159 |
| AspLEI | GCGC | 1 cut(s) | 62 |
| BalI | TGGCCA | 1 cut(s) | 42 |
| BbvI | GCAGC | 2 cut(s) | 39, 96 |
| BccI | CCATC | 1 cut(s) | 161 |
| BfoI | RGCGCY | 1 cut(s) | 63 |
| BisI | GCNGC | 2 cut(s) | 28, 110 |
| BlsI | GCNGC | 2 cut(s) | 29, 111 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseMII | CTCAG | 1 cut(s) | 138 |
| BseXI | GCAGC | 2 cut(s) | 39, 96 |
| BshFI | GGCC | 2 cut(s) | 42, 56 |
| BsnI | GGCC | 2 cut(s) | 42, 56 |
| BspANI | GGCC | 2 cut(s) | 42, 56 |
| BspCNI | CTCAG | 1 cut(s) | 139 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 131 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 58 |
| BstDEI | CTNAG | 2 cut(s) | 105, 147 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstH2I | RGCGCY | 1 cut(s) | 63 |
| BstHHI | GCGC | 1 cut(s) | 62 |
| BstV1I | GCAGC | 2 cut(s) | 39, 96 |
| BsuRI | GGCC | 2 cut(s) | 42, 56 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 1 cut(s) | 58 |
| CfoI | GCGC | 1 cut(s) | 62 |
| CviJI | RGCY | 4 cut(s) | 42, 56, 109, 211 |
| CviKI_1 | RGCY | 4 cut(s) | 42, 56, 109, 211 |
| DdeI | CTNAG | 2 cut(s) | 105, 147 |
| DraIII | CACNNNGTG | 1 cut(s) | 94 |
| EaeI | YGGCCR | 1 cut(s) | 40 |
| FaiI | YATR | 1 cut(s) | 182 |
| Fnu4HI | GCNGC | 2 cut(s) | 28, 110 |
| FokI | GGATG | 1 cut(s) | 179 |
| Fsp4HI | GCNGC | 2 cut(s) | 28, 110 |
| GlaI | GCGC | 1 cut(s) | 61 |
| GluI | GCNGC | 2 cut(s) | 28, 110 |
| HaeII | RGCGCY | 1 cut(s) | 63 |
| HaeIII | GGCC | 2 cut(s) | 42, 56 |
| HhaI | GCGC | 1 cut(s) | 62 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 1 cut(s) | 60 |
| HinP1I | GCGC | 1 cut(s) | 60 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HindIII | AAGCTT | 1 cut(s) | 209 |
| HinfI | GANTC | 3 cut(s) | 67, 115, 143 |
| Hpy166II | GTNNAC | 3 cut(s) | 97, 127, 220 |
| Hpy188I | TCNGA | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 2 cut(s) | 19, 187 |
| Hpy8I | GTNNAC | 3 cut(s) | 97, 127, 220 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 139 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 131 |
| HpyCH4V | TGCA | 1 cut(s) | 27 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 147 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 1 cut(s) | 60 |
| LpnPI | CCDG | 4 cut(s) | 24, 70, 172, 208 |
| Lsp1109I | GCAGC | 2 cut(s) | 39, 96 |
| MboII | GAAGA | 1 cut(s) | 40 |
| MlsI | TGGCCA | 1 cut(s) | 42 |
| MluCI | AATT | 2 cut(s) | 44, 159 |
| MluNI | TGGCCA | 1 cut(s) | 42 |
| MnlI | CCTC | 3 cut(s) | 46, 73, 142 |
| Mox20I | TGGCCA | 1 cut(s) | 42 |
| MscI | TGGCCA | 1 cut(s) | 42 |
| Msp20I | TGGCCA | 1 cut(s) | 42 |
| PfeI | GAWTC | 3 cut(s) | 67, 115, 143 |
| PkrI | GCNGC | 2 cut(s) | 29, 111 |
| SatI | GCNGC | 2 cut(s) | 28, 110 |
| SetI | ASST | 2 cut(s) | 111, 213 |
| Sse9I | AATT | 2 cut(s) | 44, 159 |
| TaaI | ACNGT | 2 cut(s) | 124, 131 |
| TaqI | TCGA | 3 cut(s) | 51, 65, 137 |
| TasI | AATT | 2 cut(s) | 44, 159 |
| TfiI | GAWTC | 3 cut(s) | 67, 115, 143 |
| TseI | GCWGC | 2 cut(s) | 27, 109 |
| TspGWI | ACGGA | 1 cut(s) | 123 |
| XapI | RAATTY | 1 cut(s) | 159 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 214 |