Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8132088.1

Orthogroup ID

OG0000923

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 565

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8132088.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 565 bp

agtgttttatctcgtatacaggaagctcatcggagcaaggtacttcaataaaggacatgctgcactggcagggccagtactcgacccttatgtttactctgcacgagacttaaacggtcatggctctcacactctatcgacagcaggtgggaactttgttcctggagcaagtgtgtttggcgtggggaatgggactgccaaaggtggctcccccaaggcccgagttgctgcttataaagtgtgctggccagaatttggcagtgagtgctctgatgctgacatcttggcagcgtttgatgaagcaatacatgatggggttgatgtgatttcagtctcacttggtgccgaccaccctcaaaattactttgaggatggcgctgcaattggggcattccatgctgtcaagcatggtatagttgttgtatgctcagcaggcaattctggtcctgatgctggaactgtcacaaatgttgcaccatggataataaccgttggagcaagtactttggatcgagagtttgaagcttttgttgaactccgtaatgggctgcgcctcaaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009888 GO:0010073 GO:0010074 GO:0016787 GO:0017171 GO:0019538 GO:0019827 GO:0032501 GO:0032502 GO:0043170 GO:0044238 GO:0048507 GO:0048856 GO:0070011 GO:0071704 GO:0098727 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

187

Amino Acids

19.5

Weight (kDa)

5.94

Isoelectric Point (pI)

11.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59810
fragaria_vesca	FvH4_3g00161 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42041 FvH4_3g42350
malus_domestica	MD03G1039300.v1.1 MD10G1341300.v1.1 MD11G1039600.v1.1 MD14G1139100.v1.1
prunus_persica	Prupe.4G001800_v2.0.a1 Prupe.6G031400_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1
pyrus_communis	pycom03g03030 pycom11g03350 pycom11g03360 pycom11g03370 pycom17g11100
rosa_chinensis	RchiOBHm_Chr5g0000221 RchiOBHm_Chr5g0075241 RchiOBHm_Chr5g0075251
rosa_laevigata	RLG00000030851 RLG00000036541 RLG00000036542
rosa_multiflora	Rmu_co8057730.1_g000001 Rmu_co8132088.1_g000001 Rmu_sc0000770.1_g000063 Rmu_sc0021936.1_g000001 Rmu_sc0031527.1_g000001 Rmu_ssc0000243.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006310 Rroxscaffold_1G00075880 Rroxscaffold_3G00267190
rosa_rugosa	Rorug04G0382600 Rorug05G0437400 Rorug05G0437500 Rorug05G0437600 Rorug05G0437700 Rorug05G0437800
rosa_samantha	Rh5AG001500 Rh5AG494500 Rh5AG494600 Rh5BG002900 Rh5BG516100 Rh5BG516200 Rh5CG001800 Rh5CG539900 Rh5CG540000 Rh5DG001700 Rh5DG528800 Rh5DG528900
rosa_wichuraiana	Rw5G000200 Rw5G045880 Rw5G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	235
AarI	CACCTGC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	342
AfaI	GTAC	3 cut(s)	42, 79, 503
AfiI	CCNNNNNNNGG	2 cut(s)	255, 453
AgsI	TTSAA	3 cut(s)	47, 522, 534
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	26, 525
AluI	AGCT	2 cut(s)	26, 525
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	100, 338
AlwI	GGATC	1 cut(s)	517
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	3 cut(s)	72, 217, 246
ApeKI	GCWGC	5 cut(s)	60, 228, 288, 378, 548
ApoI	RAATTY	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	378, 553
AspS9I	GGNCC	3 cut(s)	72, 218, 444
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	342
BauI	CACGAG	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	5 cut(s)	47, 215, 300, 365, 535
BccI	CCATC	2 cut(s)	306, 366
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	100, 338
BfoI	RGCGCY	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	5 cut(s)	61, 229, 289, 379, 549
BlpI	GCTNAGC	1 cut(s)	428
BlsI	GCNGC	5 cut(s)	62, 230, 290, 380, 550
BmcAI	AGTACT	2 cut(s)	79, 503
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	444
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	72, 218, 444
BmiI	GGNNCC	2 cut(s)	209, 344
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	263, 440
BpmI	CTGGAG	1 cut(s)	184
Bpu1102I	GCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	214, 477
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 453
Bse1I	ACTGG	2 cut(s)	70, 75
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	214, 477
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	2 cut(s)	255, 453
BseMII	CTCAG	1 cut(s)	442
BseNI	ACTGG	2 cut(s)	70, 75
BseXI	GCAGC	5 cut(s)	47, 215, 300, 365, 535
BsgI	GTGCAG	2 cut(s)	46, 85
BshFI	GGCC	3 cut(s)	74, 219, 248
BshNI	GGYRCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	255, 453
BsmAI	GTCTC	2 cut(s)	100, 338
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	74, 219, 248
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	509
Bsp1720I	GCTNAGC	1 cut(s)	428
Bsp19I	CCATGG	1 cut(s)	477
BspANI	GGCC	3 cut(s)	74, 219, 248
BspCNI	CTCAG	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	209, 344
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	70, 75
BssECI	CCNNGG	2 cut(s)	214, 477
BssMI	GATC	1 cut(s)	509
BssNAI	GTATAC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	214, 477
Bst1107I	GTATAC	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	117, 461, 491
BstAPI	GCANNNNNTGC	2 cut(s)	265, 396
BstC8I	GCNNGC	2 cut(s)	246, 434
BstDEI	CTNAG	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	2 cut(s)	378, 553
BstKTI	GATC	1 cut(s)	512
BstMAI	GTCTC	2 cut(s)	100, 338
BstMBI	GATC	1 cut(s)	509
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 225, 265, 387, 396, 433
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	5 cut(s)	47, 215, 300, 365, 535
BstZ17I	GTATAC	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	74, 219, 248
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	377
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	63, 266
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	246, 434
CfoI	GCGC	2 cut(s)	378, 553
Cfr13I	GGNCC	3 cut(s)	72, 218, 444
Csp6I	GTAC	3 cut(s)	41, 78, 502
CviAII	CATG	6 cut(s)	57, 120, 309, 396, 408, 478
CviJI	RGCY	8 cut(s)	26, 74, 124, 208, 219, 248, 525, 548
CviKI_1	RGCY	8 cut(s)	26, 74, 124, 208, 219, 248, 525, 548
CviQI	GTAC	3 cut(s)	41, 78, 502
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	1 cut(s)	511
DpnII	GATC	1 cut(s)	509
DraIII	CACNNNGTG	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	214, 477
Eco47I	GGWCC	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	214, 477
ErhI	CCWWGG	2 cut(s)	214, 477
FaeI	CATG	6 cut(s)	60, 123, 312, 399, 411, 481
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	6 cut(s)	56, 119, 308, 395, 407, 477
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	5 cut(s)	61, 229, 289, 379, 549
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	5 cut(s)	61, 229, 289, 379, 549
GlaI	GCGC	2 cut(s)	377, 552
GluI	GCNGC	5 cut(s)	61, 229, 289, 379, 549
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	3 cut(s)	74, 219, 248
HhaI	GCGC	2 cut(s)	378, 553
Hin1II	CATG	6 cut(s)	60, 123, 312, 399, 411, 481
Hin6I	GCGC	2 cut(s)	376, 551
HinP1I	GCGC	2 cut(s)	376, 551
HindIII	AAGCTT	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	17, 95
Hpy188I	TCNGA	3 cut(s)	33, 272, 564
Hpy188III	TCNNGA	2 cut(s)	447, 513
Hpy8I	GTNNAC	2 cut(s)	17, 95
HpyCH4III	ACNGT	3 cut(s)	117, 461, 491
HpyCH4V	TGCA	4 cut(s)	63, 102, 381, 474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 225, 265, 387, 396, 433
HpyF3I	CTNAG	1 cut(s)	428
Hsp92II	CATG	6 cut(s)	60, 123, 312, 399, 411, 481
HspAI	GCGC	2 cut(s)	376, 551
Kzo9I	GATC	1 cut(s)	509
LmnI	GCTCC	4 cut(s)	33, 165, 213, 495
Lsp1109I	GCAGC	5 cut(s)	47, 215, 300, 365, 535
LweI	GCATC	2 cut(s)	263, 440
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	1 cut(s)	511
MboI	GATC	1 cut(s)	509
MfeI	CAATTG	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	4 cut(s)	252, 359, 382, 437
MluNI	TGGCCA	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	3 cut(s)	362, 364, 564
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	66, 225, 265, 387, 396, 433
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	1 cut(s)	509
NlaIII	CATG	6 cut(s)	60, 123, 312, 399, 411, 481
NlaIV	GGNNCC	2 cut(s)	209, 344
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	135
PctI	GAATGC	1 cut(s)	390
PflMI	CCANNNNNTGG	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	62, 230, 290, 380, 550
PsiI	TTATAA	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	209, 344
PspPI	GGNCC	3 cut(s)	72, 218, 444
RsaI	GTAC	3 cut(s)	42, 79, 503
RsaNI	GTAC	3 cut(s)	41, 78, 502
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	5 cut(s)	61, 229, 289, 379, 549
Sau3AI	GATC	1 cut(s)	509
Sau96I	GGNCC	3 cut(s)	72, 218, 444
ScaI	AGTACT	2 cut(s)	79, 503
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	28, 42, 149, 206, 527, 562
SfaNI	GCATC	2 cut(s)	263, 440
SinI	GGWCC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	4 cut(s)	252, 359, 382, 437
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	2 cut(s)	214, 477
TaaI	ACNGT	3 cut(s)	117, 461, 491
TaqI	TCGA	3 cut(s)	82, 138, 512
TasI	AATT	4 cut(s)	252, 359, 382, 437
TatI	WGTACW	2 cut(s)	77, 501
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	70, 266
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	5 cut(s)	60, 228, 288, 378, 548
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	70, 266
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	16
ZrmI	AGTACT	2 cut(s)	79, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.