PA domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 204, 263, 783 |
| Acc36I | ACCTGC | 1 cut(s) | 304 |
| AccB1I | GGYRCC | 1 cut(s) | 470 |
| AccII | CGCG | 1 cut(s) | 924 |
| AciI | CCGC | 1 cut(s) | 607 |
| AclWI | GGATC | 6 cut(s) | 20, 33, 242, 346, 674, 687 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcsI | RAATTY | 3 cut(s) | 48, 918, 936 |
| AcuI | CTGAAG | 2 cut(s) | 536, 792 |
| AfaI | GTAC | 2 cut(s) | 159, 180 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 327 |
| AflII | CTTAAG | 1 cut(s) | 356 |
| AgsI | TTSAA | 7 cut(s) | 192, 640, 817, 828, 967, 973, 1000 |
| AjnI | CCWGG | 4 cut(s) | 21, 376, 682, 1024 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1087, 1119 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 10, 42 |
| AluBI | AGCT | 9 cut(s) | 104, 188, 314, 395, 432, 497, 776, 1016, 1034 |
| AluI | AGCT | 9 cut(s) | 104, 188, 314, 395, 432, 497, 776, 1016, 1034 |
| Alw26I | GTCTC | 1 cut(s) | 1015 |
| AlwI | GGATC | 6 cut(s) | 20, 33, 242, 346, 674, 687 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 839, 860 |
| AoxI | GGCC | 6 cut(s) | 108, 144, 267, 329, 508, 900 |
| ApeKI | GCWGC | 5 cut(s) | 101, 311, 395, 1031, 1112 |
| ApoI | RAATTY | 3 cut(s) | 48, 918, 936 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 39, 71 |
| AseI | ATTAAT | 1 cut(s) | 198 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 995 |
| AspS9I | GGNCC | 3 cut(s) | 268, 329, 900 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 995 |
| BamHI | GGATCC | 2 cut(s) | 25, 679 |
| BanI | GGYRCC | 1 cut(s) | 470 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 509, 541 |
| BbsI | GAAGAC | 1 cut(s) | 524 |
| BbvI | GCAGC | 5 cut(s) | 113, 323, 382, 1043, 1099 |
| BccI | CCATC | 2 cut(s) | 203, 1064 |
| BceAI | ACGGC | 1 cut(s) | 282 |
| BciT130I | CCWGG | 4 cut(s) | 23, 378, 684, 1026 |
| BcoDI | GTCTC | 1 cut(s) | 1015 |
| BfaI | CTAG | 3 cut(s) | 83, 719, 894 |
| BfmI | CTRYAG | 1 cut(s) | 420 |
| BfrI | CTTAAG | 1 cut(s) | 356 |
| BfuAI | ACCTGC | 1 cut(s) | 304 |
| BisI | GCNGC | 5 cut(s) | 102, 312, 396, 1032, 1113 |
| BlsI | GCNGC | 5 cut(s) | 103, 313, 397, 1033, 1114 |
| Bme1390I | CCNGG | 4 cut(s) | 23, 378, 684, 1026 |
| BmgT120I | GGNCC | 3 cut(s) | 268, 329, 900 |
| BmiI | GGNNCC | 7 cut(s) | 19, 27, 270, 472, 681, 901, 954 |
| BmrFI | CCNGG | 4 cut(s) | 23, 378, 684, 1026 |
| BmsI | GCATC | 1 cut(s) | 747 |
| BoxI | GACNNNNGTC | 1 cut(s) | 90 |
| BpiI | GAAGAC | 1 cut(s) | 524 |
| BpmI | CTGGAG | 2 cut(s) | 519, 556 |
| BsaAI | YACGTR | 1 cut(s) | 178 |
| BsaBI | GATNNNNATC | 1 cut(s) | 171 |
| BsaI | GGTCTC | 1 cut(s) | 1015 |
| BsaJI | CCNNGG | 2 cut(s) | 21, 675 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 327 |
| Bse1I | ACTGG | 4 cut(s) | 147, 539, 801, 929 |
| Bse8I | GATNNNNATC | 1 cut(s) | 171 |
| BseBI | CCWGG | 4 cut(s) | 23, 378, 684, 1026 |
| BseDI | CCNNGG | 2 cut(s) | 21, 675 |
| BseGI | GGATG | 2 cut(s) | 129, 1075 |
| BseJI | GATNNNNATC | 1 cut(s) | 171 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BseMII | CTCAG | 2 cut(s) | 362, 867 |
| BseNI | ACTGG | 4 cut(s) | 147, 539, 801, 929 |
| BseRI | GAGGAG | 2 cut(s) | 310, 336 |
| BseXI | GCAGC | 5 cut(s) | 113, 323, 382, 1043, 1099 |
| BsgI | GTGCAG | 1 cut(s) | 1050 |
| Bsh1236I | CGCG | 1 cut(s) | 924 |
| BshFI | GGCC | 6 cut(s) | 110, 146, 269, 331, 510, 902 |
| BshNI | GGYRCC | 1 cut(s) | 470 |
| BsiSI | CCGG | 1 cut(s) | 111 |
| BslFI | GGGAC | 2 cut(s) | 599, 821 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BsmAI | GTCTC | 1 cut(s) | 1015 |
| BsmFI | GGGAC | 2 cut(s) | 599, 821 |
| BsnI | GGCC | 6 cut(s) | 110, 146, 269, 331, 510, 902 |
| Bso31I | GGTCTC | 1 cut(s) | 1015 |
| Bsp143I | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| Bsp19I | CCATGG | 1 cut(s) | 675 |
| Bsp68I | TCGCGA | 1 cut(s) | 924 |
| BspACI | CCGC | 1 cut(s) | 607 |
| BspANI | GGCC | 6 cut(s) | 110, 146, 269, 331, 510, 902 |
| BspCNI | CTCAG | 2 cut(s) | 361, 866 |
| BspFNI | CGCG | 1 cut(s) | 924 |
| BspHI | TCATGA | 1 cut(s) | 564 |
| BspLI | GGNNCC | 7 cut(s) | 19, 27, 270, 472, 681, 901, 954 |
| BspMI | ACCTGC | 1 cut(s) | 304 |
| BspPI | GGATC | 6 cut(s) | 20, 33, 242, 346, 674, 687 |
| BspT107I | GGYRCC | 1 cut(s) | 470 |
| BspTI | CTTAAG | 1 cut(s) | 356 |
| BspTNI | GGTCTC | 1 cut(s) | 1015 |
| BsrI | ACTGG | 4 cut(s) | 147, 539, 801, 929 |
| BssECI | CCNNGG | 2 cut(s) | 21, 675 |
| BssMI | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| BssT1I | CCWWGG | 1 cut(s) | 675 |
| Bst2UI | CCWGG | 4 cut(s) | 23, 378, 684, 1026 |
| Bst4CI | ACNGT | 3 cut(s) | 595, 835, 862 |
| Bst6I | CTCTTC | 2 cut(s) | 865, 981 |
| BstAFI | CTTAAG | 1 cut(s) | 356 |
| BstBAI | YACGTR | 1 cut(s) | 178 |
| BstDEI | CTNAG | 6 cut(s) | 30, 62, 348, 853, 1017, 1035 |
| BstDSI | CCRYGG | 1 cut(s) | 675 |
| BstEII | GGTNACC | 1 cut(s) | 1003 |
| BstF5I | GGATG | 2 cut(s) | 129, 1075 |
| BstFNI | CGCG | 1 cut(s) | 924 |
| BstKTI | GATC | 5 cut(s) | 28, 250, 354, 682, 693 |
| BstMAI | GTCTC | 1 cut(s) | 1015 |
| BstMBI | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 107, 224, 275, 337, 908 |
| BstNI | CCWGG | 4 cut(s) | 23, 378, 684, 1026 |
| BstNSI | RCATGY | 1 cut(s) | 340 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 90 |
| BstPI | GGTNACC | 1 cut(s) | 1003 |
| BstSCI | CCNGG | 4 cut(s) | 21, 376, 682, 1024 |
| BstSFI | CTRYAG | 1 cut(s) | 420 |
| BstUI | CGCG | 1 cut(s) | 924 |
| BstV1I | GCAGC | 5 cut(s) | 113, 323, 382, 1043, 1099 |
| BstV2I | GAAGAC | 1 cut(s) | 524 |
| BstX2I | RGATCY | 3 cut(s) | 25, 351, 679 |
| BstYI | RGATCY | 3 cut(s) | 25, 351, 679 |
| BsuRI | GGCC | 6 cut(s) | 110, 146, 269, 331, 510, 902 |
| BtgI | CCRYGG | 1 cut(s) | 675 |
| BtsCI | GGATG | 2 cut(s) | 129, 1075 |
| BtsI | GCAGTG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 5 cut(s) | 154, 369, 591, 858, 954 |
| BtuMI | TCGCGA | 1 cut(s) | 924 |
| BveI | ACCTGC | 1 cut(s) | 304 |
| CaiI | CAGNNNCTG | 2 cut(s) | 839, 860 |
| CciI | TCATGA | 1 cut(s) | 564 |
| Cfr13I | GGNCC | 3 cut(s) | 268, 329, 900 |
| CseI | GACGC | 1 cut(s) | 529 |
| CsiI | ACCWGGT | 1 cut(s) | 1024 |
| Csp6I | GTAC | 2 cut(s) | 158, 179 |
| CviAII | CATG | 6 cut(s) | 337, 478, 491, 565, 650, 676 |
| CviQI | GTAC | 2 cut(s) | 158, 179 |
| DdeI | CTNAG | 6 cut(s) | 30, 62, 348, 853, 1017, 1035 |
| DpnI | GATC | 5 cut(s) | 27, 249, 353, 681, 692 |
| DpnII | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 2 cut(s) | 865, 981 |
| EarI | CTCTTC | 2 cut(s) | 865, 981 |
| Eco130I | CCWWGG | 1 cut(s) | 675 |
| Eco147I | AGGCCT | 1 cut(s) | 510 |
| Eco31I | GGTCTC | 1 cut(s) | 1015 |
| Eco32I | GATATC | 1 cut(s) | 367 |
| Eco57I | CTGAAG | 2 cut(s) | 536, 792 |
| Eco91I | GGTNACC | 1 cut(s) | 1003 |
| EcoO65I | GGTNACC | 1 cut(s) | 1003 |
| EcoRI | GAATTC | 1 cut(s) | 918 |
| EcoRII | CCWGG | 4 cut(s) | 21, 376, 682, 1024 |
| EcoRV | GATATC | 1 cut(s) | 367 |
| EcoT14I | CCWWGG | 1 cut(s) | 675 |
| ErhI | CCWWGG | 1 cut(s) | 675 |
| FaeI | CATG | 6 cut(s) | 340, 481, 494, 568, 653, 679 |
| FaqI | GGGAC | 2 cut(s) | 599, 821 |
| FatI | CATG | 6 cut(s) | 336, 477, 490, 564, 649, 675 |
| FauNDI | CATATG | 1 cut(s) | 907 |
| Fnu4HI | GCNGC | 5 cut(s) | 102, 312, 396, 1032, 1113 |
| FokI | GGATG | 2 cut(s) | 136, 1082 |
| Fsp4HI | GCNGC | 5 cut(s) | 102, 312, 396, 1032, 1113 |
| FspBI | CTAG | 3 cut(s) | 83, 719, 894 |
| GluI | GCNGC | 5 cut(s) | 102, 312, 396, 1032, 1113 |
| GsuI | CTGGAG | 2 cut(s) | 519, 556 |
| HaeIII | GGCC | 6 cut(s) | 110, 146, 269, 331, 510, 902 |
| HapII | CCGG | 1 cut(s) | 111 |
| HgaI | GACGC | 1 cut(s) | 529 |
| Hin1II | CATG | 6 cut(s) | 340, 481, 494, 568, 653, 679 |
| HincII | GTYRAC | 2 cut(s) | 95, 811 |
| HindII | GTYRAC | 2 cut(s) | 95, 811 |
| HinfI | GANTC | 5 cut(s) | 127, 448, 464, 598, 1090 |
| HpaII | CCGG | 1 cut(s) | 111 |
| HphI | GGTGA | 2 cut(s) | 49, 995 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 811 |
| Hpy188I | TCNGA | 6 cut(s) | 166, 351, 516, 772, 917, 1069 |
| Hpy188III | TCNNGA | 3 cut(s) | 565, 923, 964 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 811 |
| HpyAV | CCTTC | 4 cut(s) | 28, 34, 521, 834 |
| HpyCH4III | ACNGT | 3 cut(s) | 595, 835, 862 |
| HpyCH4IV | ACGT | 1 cut(s) | 177 |
| HpyCH4V | TGCA | 7 cut(s) | 398, 548, 560, 575, 760, 911, 1031 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 107, 224, 275, 337, 908 |
| HpyF3I | CTNAG | 6 cut(s) | 30, 62, 348, 853, 1017, 1035 |
| HpySE526I | ACGT | 1 cut(s) | 177 |
| Hsp92II | CATG | 6 cut(s) | 340, 481, 494, 568, 653, 679 |
| Kzo9I | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| LmnI | GCTCC | 5 cut(s) | 113, 304, 379, 781, 952 |
| Lsp1109I | GCAGC | 5 cut(s) | 113, 323, 382, 1043, 1099 |
| LweI | GCATC | 1 cut(s) | 747 |
| MabI | ACCWGGT | 1 cut(s) | 1024 |
| MaeI | CTAG | 3 cut(s) | 83, 719, 894 |
| MaeII | ACGT | 1 cut(s) | 177 |
| MaeIII | GTNAC | 4 cut(s) | 457, 856, 862, 1003 |
| MalI | GATC | 5 cut(s) | 27, 249, 353, 681, 692 |
| MboI | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| MboII | GAAGA | 4 cut(s) | 529, 882, 889, 998 |
| MflI | RGATCY | 3 cut(s) | 25, 351, 679 |
| MluCI | AATT | 6 cut(s) | 48, 199, 640, 817, 918, 936 |
| MlyI | GAGTC | 1 cut(s) | 1099 |
| MmeI | TCCRAC | 2 cut(s) | 913, 1047 |
| MnlI | CCTC | 9 cut(s) | 136, 331, 357, 484, 498, 576, 890, 1046, 1117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 995 |
| MseI | TTAA | 4 cut(s) | 12, 198, 357, 624 |
| MslI | CAYNNNNRTG | 1 cut(s) | 476 |
| MspCI | CTTAAG | 1 cut(s) | 356 |
| MspI | CCGG | 1 cut(s) | 111 |
| MspR9I | CCNGG | 4 cut(s) | 23, 378, 684, 1026 |
| MvaI | CCWGG | 4 cut(s) | 23, 378, 684, 1026 |
| MvnI | CGCG | 1 cut(s) | 924 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 107, 224, 275, 337, 908 |
| NcoI | CCATGG | 1 cut(s) | 675 |
| NdeI | CATATG | 1 cut(s) | 907 |
| NdeII | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| NlaIII | CATG | 6 cut(s) | 340, 481, 494, 568, 653, 679 |
| NlaIV | GGNNCC | 7 cut(s) | 19, 27, 270, 472, 681, 901, 954 |
| NmuCI | GTSAC | 2 cut(s) | 856, 862 |
| NruI | TCGCGA | 1 cut(s) | 924 |
| NspI | RCATGY | 1 cut(s) | 340 |
| PagI | TCATGA | 1 cut(s) | 564 |
| PceI | AGGCCT | 1 cut(s) | 510 |
| PdmI | GAANNNNTTC | 1 cut(s) | 995 |
| PfeI | GAWTC | 4 cut(s) | 127, 448, 464, 598 |
| PkrI | GCNGC | 5 cut(s) | 103, 313, 397, 1033, 1114 |
| PleI | GAGTC | 1 cut(s) | 1098 |
| PpsI | GAGTC | 1 cut(s) | 1098 |
| Ppu21I | YACGTR | 1 cut(s) | 178 |
| PshAI | GACNNNNGTC | 1 cut(s) | 90 |
| PshBI | ATTAAT | 1 cut(s) | 198 |
| PsiI | TTATAA | 3 cut(s) | 204, 263, 783 |
| Psp6I | CCWGG | 4 cut(s) | 21, 376, 682, 1024 |
| PspEI | GGTNACC | 1 cut(s) | 1003 |
| PspGI | CCWGG | 4 cut(s) | 21, 376, 682, 1024 |
| PspN4I | GGNNCC | 7 cut(s) | 19, 27, 270, 472, 681, 901, 954 |
| PspPI | GGNCC | 3 cut(s) | 268, 329, 900 |
| PstNI | CAGNNNCTG | 2 cut(s) | 839, 860 |
| PsuI | RGATCY | 3 cut(s) | 25, 351, 679 |
| RruI | TCGCGA | 1 cut(s) | 924 |
| RsaI | GTAC | 2 cut(s) | 159, 180 |
| RsaNI | GTAC | 2 cut(s) | 158, 179 |
| RseI | CAYNNNNRTG | 1 cut(s) | 476 |
| SaqAI | TTAA | 4 cut(s) | 12, 198, 357, 624 |
| SatI | GCNGC | 5 cut(s) | 102, 312, 396, 1032, 1113 |
| Sau3AI | GATC | 5 cut(s) | 25, 247, 351, 679, 690 |
| Sau96I | GGNCC | 3 cut(s) | 268, 329, 900 |
| SchI | GAGTC | 1 cut(s) | 1099 |
| ScrFI | CCNGG | 4 cut(s) | 23, 378, 684, 1026 |
| SexAI | ACCWGGT | 1 cut(s) | 1024 |
| SfaNI | GCATC | 1 cut(s) | 747 |
| SfcI | CTRYAG | 1 cut(s) | 420 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 476 |
| SmlI | CTYRAG | 1 cut(s) | 356 |
| SmoI | CTYRAG | 1 cut(s) | 356 |
| Sse9I | AATT | 6 cut(s) | 48, 199, 640, 817, 918, 936 |
| SseBI | AGGCCT | 1 cut(s) | 510 |
| SsiI | CCGC | 1 cut(s) | 607 |
| SspMI | CTAG | 3 cut(s) | 83, 719, 894 |
| StuI | AGGCCT | 1 cut(s) | 510 |
| StyD4I | CCNGG | 4 cut(s) | 21, 376, 682, 1024 |
| StyI | CCWWGG | 1 cut(s) | 675 |
| TaaI | ACNGT | 3 cut(s) | 595, 835, 862 |
| TaiI | ACGT | 1 cut(s) | 180 |
| TasI | AATT | 6 cut(s) | 48, 199, 640, 817, 918, 936 |
| TatI | WGTACW | 1 cut(s) | 157 |
| TfiI | GAWTC | 4 cut(s) | 127, 448, 464, 598 |
| Tru1I | TTAA | 4 cut(s) | 12, 198, 357, 624 |
| Tru9I | TTAA | 4 cut(s) | 12, 198, 357, 624 |
| TscAI | CASTG | 5 cut(s) | 154, 376, 598, 865, 954 |
| TseFI | GTSAC | 2 cut(s) | 856, 862 |
| TseI | GCWGC | 5 cut(s) | 101, 311, 395, 1031, 1112 |
| Tsp45I | GTSAC | 2 cut(s) | 856, 862 |
| TspDTI | ATGAA | 2 cut(s) | 531, 610 |
| TspGWI | ACGGA | 1 cut(s) | 441 |
| TspRI | CASTG | 5 cut(s) | 154, 376, 598, 865, 954 |
| Vha464I | CTTAAG | 1 cut(s) | 356 |
| VspI | ATTAAT | 1 cut(s) | 198 |
| XapI | RAATTY | 3 cut(s) | 48, 918, 936 |
| XceI | RCATGY | 1 cut(s) | 340 |
| XmnI | GAANNNNTTC | 1 cut(s) | 995 |
| XspI | CTAG | 3 cut(s) | 83, 719, 894 |