Rroxscaffold_1G00075880

PA domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
96457974 .. 96461345
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075880.1

Sequence Viewer

Length: 1128 bp
ATGCTTTGCCTTAAAGGAACCCTGGATCCTAAGAAGGTGAAGGGCAAAATTTTGGTCTGTCTTAGGGGTATCAGTCCAAGACTAGACAAGGGTCAACAAGCAGCTCTGGCCGGAGCAGTTGGGATGATTCTTTGTAATGATGAGGCCAGTGGTAATGTACTCTCTGATGATTATCACGTACTACCAGCTTCAAACATTAATTATAAAGATGGGGTTGCTGTCTTTGCCTACATAAACTCAACAGATGATCCATTGGGATTTATAACGGCCCCAACAGCACAACTGAATAGAAAACCTGCTCCATTTATGGCAGCTTTCTCCTCGCAAGGGCCAAACATGCTCACTCCTCAGATCCTTAAGCCTGATATCACTGCTCCTGGTGTAAATATCATAGCTGCATACACCCAAGCAAAAAGCCCTACAGGACAAAGCTATGATAAACGCAGGATTCCGTTTGTTACTGAATCTGGCACCTCCATGTCTTGCCCTCATGTAGCTGGAGTTGTAGGCCTTCTGAAGACGCTCTACCCTGACTGGAGTTCATCTGCAATAAAATCTGCAATCATGACAACTGCAAGAACGAGGGACAACACTGTGAATCCAATGCGGAATGGCTCGTTCATTAAAGCAACACCATTCAATTATGGGCATGGTCATATAAGACCAAATCGTGCCATGGATCCTGGCTTGATCTATGACCTAAACATCAATGATTACCTAGACTTTCTTTGTGTCATTGGCTATAACAAGACAATGATGCAACTTTTCTCTGAAGCTCCTTATAAATGCCCCAAGTCAGCCAGTCTTGTTGACTTCAATTACCCTTCAATAACAGTCCCTGATTTGTCTGGCTCAGTCACTGTGACAAGAAGAGTGAAGAATGTTGGTTCTCCTAGAGGGGCCACATATGCAGTCCGAATTCGCGAACCAGTTGGAATTTCAGTATCAGTGGAGCCTAATATCTTGAAGTTCAATAAAATAGGTGAAGAGAAAAGTTTCAAGGTAACCCTGAAAGCTAAGAGACCTGGTGCAGCTAAGAACTATGTGTTTGGAGGGCTTATTTGGTCGGATGGCACACACTATGTAAGGAGTCCAATAGTAGTTTCCTCTGCTGCTGGTGTTGTTTAG

Protein Analysis

375

Amino Acids

40.43

Weight (kDa)

9.54

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 10 - 73 7.9e-12 PA domain
Peptidase_S8 PF00082 67 - 203 9.8e-21 Subtilase family
fn3_6 PF17766 271 - 368 2.4e-31 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 204, 263, 783
Acc36I ACCTGC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 470
AccII CGCG 1 cut(s) 924
AciI CCGC 1 cut(s) 607
AclWI GGATC 6 cut(s) 20, 33, 242, 346, 674, 687
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 3 cut(s) 48, 918, 936
AcuI CTGAAG 2 cut(s) 536, 792
AfaI GTAC 2 cut(s) 159, 180
AfiI CCNNNNNNNGG 1 cut(s) 327
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 7 cut(s) 192, 640, 817, 828, 967, 973, 1000
AjnI CCWGG 4 cut(s) 21, 376, 682, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 1087, 1119
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 9 cut(s) 104, 188, 314, 395, 432, 497, 776, 1016, 1034
AluI AGCT 9 cut(s) 104, 188, 314, 395, 432, 497, 776, 1016, 1034
Alw26I GTCTC 1 cut(s) 1015
AlwI GGATC 6 cut(s) 20, 33, 242, 346, 674, 687
AlwNI CAGNNNCTG 2 cut(s) 839, 860
AoxI GGCC 6 cut(s) 108, 144, 267, 329, 508, 900
ApeKI GCWGC 5 cut(s) 101, 311, 395, 1031, 1112
ApoI RAATTY 3 cut(s) 48, 918, 936
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 995
AspS9I GGNCC 3 cut(s) 268, 329, 900
AsuHPI GGTGA 2 cut(s) 49, 995
BamHI GGATCC 2 cut(s) 25, 679
BanI GGYRCC 1 cut(s) 470
BarI GAAGNNNNNNTAC 2 cut(s) 509, 541
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 5 cut(s) 113, 323, 382, 1043, 1099
BccI CCATC 2 cut(s) 203, 1064
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 4 cut(s) 23, 378, 684, 1026
BcoDI GTCTC 1 cut(s) 1015
BfaI CTAG 3 cut(s) 83, 719, 894
BfmI CTRYAG 1 cut(s) 420
BfrI CTTAAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 304
BisI GCNGC 5 cut(s) 102, 312, 396, 1032, 1113
BlsI GCNGC 5 cut(s) 103, 313, 397, 1033, 1114
Bme1390I CCNGG 4 cut(s) 23, 378, 684, 1026
BmgT120I GGNCC 3 cut(s) 268, 329, 900
BmiI GGNNCC 7 cut(s) 19, 27, 270, 472, 681, 901, 954
BmrFI CCNGG 4 cut(s) 23, 378, 684, 1026
BmsI GCATC 1 cut(s) 747
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 519, 556
BsaAI YACGTR 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 2 cut(s) 21, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 4 cut(s) 147, 539, 801, 929
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 4 cut(s) 23, 378, 684, 1026
BseDI CCNNGG 2 cut(s) 21, 675
BseGI GGATG 2 cut(s) 129, 1075
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 362, 867
BseNI ACTGG 4 cut(s) 147, 539, 801, 929
BseRI GAGGAG 2 cut(s) 310, 336
BseXI GCAGC 5 cut(s) 113, 323, 382, 1043, 1099
BsgI GTGCAG 1 cut(s) 1050
Bsh1236I CGCG 1 cut(s) 924
BshFI GGCC 6 cut(s) 110, 146, 269, 331, 510, 902
BshNI GGYRCC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 2 cut(s) 599, 821
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 1015
BsmFI GGGAC 2 cut(s) 599, 821
BsnI GGCC 6 cut(s) 110, 146, 269, 331, 510, 902
Bso31I GGTCTC 1 cut(s) 1015
Bsp143I GATC 5 cut(s) 25, 247, 351, 679, 690
Bsp19I CCATGG 1 cut(s) 675
Bsp68I TCGCGA 1 cut(s) 924
BspACI CCGC 1 cut(s) 607
BspANI GGCC 6 cut(s) 110, 146, 269, 331, 510, 902
BspCNI CTCAG 2 cut(s) 361, 866
BspFNI CGCG 1 cut(s) 924
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 7 cut(s) 19, 27, 270, 472, 681, 901, 954
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 6 cut(s) 20, 33, 242, 346, 674, 687
BspT107I GGYRCC 1 cut(s) 470
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 1015
BsrI ACTGG 4 cut(s) 147, 539, 801, 929
BssECI CCNNGG 2 cut(s) 21, 675
BssMI GATC 5 cut(s) 25, 247, 351, 679, 690
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 4 cut(s) 23, 378, 684, 1026
Bst4CI ACNGT 3 cut(s) 595, 835, 862
Bst6I CTCTTC 2 cut(s) 865, 981
BstAFI CTTAAG 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 178
BstDEI CTNAG 6 cut(s) 30, 62, 348, 853, 1017, 1035
BstDSI CCRYGG 1 cut(s) 675
BstEII GGTNACC 1 cut(s) 1003
BstF5I GGATG 2 cut(s) 129, 1075
BstFNI CGCG 1 cut(s) 924
BstKTI GATC 5 cut(s) 28, 250, 354, 682, 693
BstMAI GTCTC 1 cut(s) 1015
BstMBI GATC 5 cut(s) 25, 247, 351, 679, 690
BstMWI GCNNNNNNNGC 5 cut(s) 107, 224, 275, 337, 908
BstNI CCWGG 4 cut(s) 23, 378, 684, 1026
BstNSI RCATGY 1 cut(s) 340
BstPAI GACNNNNGTC 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 1003
BstSCI CCNGG 4 cut(s) 21, 376, 682, 1024
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 924
BstV1I GCAGC 5 cut(s) 113, 323, 382, 1043, 1099
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 3 cut(s) 25, 351, 679
BstYI RGATCY 3 cut(s) 25, 351, 679
BsuRI GGCC 6 cut(s) 110, 146, 269, 331, 510, 902
BtgI CCRYGG 1 cut(s) 675
BtsCI GGATG 2 cut(s) 129, 1075
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 5 cut(s) 154, 369, 591, 858, 954
BtuMI TCGCGA 1 cut(s) 924
BveI ACCTGC 1 cut(s) 304
CaiI CAGNNNCTG 2 cut(s) 839, 860
CciI TCATGA 1 cut(s) 564
Cfr13I GGNCC 3 cut(s) 268, 329, 900
CseI GACGC 1 cut(s) 529
CsiI ACCWGGT 1 cut(s) 1024
Csp6I GTAC 2 cut(s) 158, 179
CviAII CATG 6 cut(s) 337, 478, 491, 565, 650, 676
CviQI GTAC 2 cut(s) 158, 179
DdeI CTNAG 6 cut(s) 30, 62, 348, 853, 1017, 1035
DpnI GATC 5 cut(s) 27, 249, 353, 681, 692
DpnII GATC 5 cut(s) 25, 247, 351, 679, 690
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 865, 981
EarI CTCTTC 2 cut(s) 865, 981
Eco130I CCWWGG 1 cut(s) 675
Eco147I AGGCCT 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 1015
Eco32I GATATC 1 cut(s) 367
Eco57I CTGAAG 2 cut(s) 536, 792
Eco91I GGTNACC 1 cut(s) 1003
EcoO65I GGTNACC 1 cut(s) 1003
EcoRI GAATTC 1 cut(s) 918
EcoRII CCWGG 4 cut(s) 21, 376, 682, 1024
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 6 cut(s) 340, 481, 494, 568, 653, 679
FaqI GGGAC 2 cut(s) 599, 821
FatI CATG 6 cut(s) 336, 477, 490, 564, 649, 675
FauNDI CATATG 1 cut(s) 907
Fnu4HI GCNGC 5 cut(s) 102, 312, 396, 1032, 1113
FokI GGATG 2 cut(s) 136, 1082
Fsp4HI GCNGC 5 cut(s) 102, 312, 396, 1032, 1113
FspBI CTAG 3 cut(s) 83, 719, 894
GluI GCNGC 5 cut(s) 102, 312, 396, 1032, 1113
GsuI CTGGAG 2 cut(s) 519, 556
HaeIII GGCC 6 cut(s) 110, 146, 269, 331, 510, 902
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 529
Hin1II CATG 6 cut(s) 340, 481, 494, 568, 653, 679
HincII GTYRAC 2 cut(s) 95, 811
HindII GTYRAC 2 cut(s) 95, 811
HinfI GANTC 5 cut(s) 127, 448, 464, 598, 1090
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 49, 995
Hpy166II GTNNAC 2 cut(s) 95, 811
Hpy188I TCNGA 6 cut(s) 166, 351, 516, 772, 917, 1069
Hpy188III TCNNGA 3 cut(s) 565, 923, 964
Hpy8I GTNNAC 2 cut(s) 95, 811
HpyAV CCTTC 4 cut(s) 28, 34, 521, 834
HpyCH4III ACNGT 3 cut(s) 595, 835, 862
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 7 cut(s) 398, 548, 560, 575, 760, 911, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 224, 275, 337, 908
HpyF3I CTNAG 6 cut(s) 30, 62, 348, 853, 1017, 1035
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 6 cut(s) 340, 481, 494, 568, 653, 679
Kzo9I GATC 5 cut(s) 25, 247, 351, 679, 690
LmnI GCTCC 5 cut(s) 113, 304, 379, 781, 952
Lsp1109I GCAGC 5 cut(s) 113, 323, 382, 1043, 1099
LweI GCATC 1 cut(s) 747
MabI ACCWGGT 1 cut(s) 1024
MaeI CTAG 3 cut(s) 83, 719, 894
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 4 cut(s) 457, 856, 862, 1003
MalI GATC 5 cut(s) 27, 249, 353, 681, 692
MboI GATC 5 cut(s) 25, 247, 351, 679, 690
MboII GAAGA 4 cut(s) 529, 882, 889, 998
MflI RGATCY 3 cut(s) 25, 351, 679
MluCI AATT 6 cut(s) 48, 199, 640, 817, 918, 936
MlyI GAGTC 1 cut(s) 1099
MmeI TCCRAC 2 cut(s) 913, 1047
MnlI CCTC 9 cut(s) 136, 331, 357, 484, 498, 576, 890, 1046, 1117
MroXI GAANNNNTTC 1 cut(s) 995
MseI TTAA 4 cut(s) 12, 198, 357, 624
MslI CAYNNNNRTG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 4 cut(s) 23, 378, 684, 1026
MvaI CCWGG 4 cut(s) 23, 378, 684, 1026
MvnI CGCG 1 cut(s) 924
MwoI GCNNNNNNNGC 5 cut(s) 107, 224, 275, 337, 908
NcoI CCATGG 1 cut(s) 675
NdeI CATATG 1 cut(s) 907
NdeII GATC 5 cut(s) 25, 247, 351, 679, 690
NlaIII CATG 6 cut(s) 340, 481, 494, 568, 653, 679
NlaIV GGNNCC 7 cut(s) 19, 27, 270, 472, 681, 901, 954
NmuCI GTSAC 2 cut(s) 856, 862
NruI TCGCGA 1 cut(s) 924
NspI RCATGY 1 cut(s) 340
PagI TCATGA 1 cut(s) 564
PceI AGGCCT 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 995
PfeI GAWTC 4 cut(s) 127, 448, 464, 598
PkrI GCNGC 5 cut(s) 103, 313, 397, 1033, 1114
PleI GAGTC 1 cut(s) 1098
PpsI GAGTC 1 cut(s) 1098
Ppu21I YACGTR 1 cut(s) 178
PshAI GACNNNNGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 3 cut(s) 204, 263, 783
Psp6I CCWGG 4 cut(s) 21, 376, 682, 1024
PspEI GGTNACC 1 cut(s) 1003
PspGI CCWGG 4 cut(s) 21, 376, 682, 1024
PspN4I GGNNCC 7 cut(s) 19, 27, 270, 472, 681, 901, 954
PspPI GGNCC 3 cut(s) 268, 329, 900
PstNI CAGNNNCTG 2 cut(s) 839, 860
PsuI RGATCY 3 cut(s) 25, 351, 679
RruI TCGCGA 1 cut(s) 924
RsaI GTAC 2 cut(s) 159, 180
RsaNI GTAC 2 cut(s) 158, 179
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 4 cut(s) 12, 198, 357, 624
SatI GCNGC 5 cut(s) 102, 312, 396, 1032, 1113
Sau3AI GATC 5 cut(s) 25, 247, 351, 679, 690
Sau96I GGNCC 3 cut(s) 268, 329, 900
SchI GAGTC 1 cut(s) 1099
ScrFI CCNGG 4 cut(s) 23, 378, 684, 1026
SexAI ACCWGGT 1 cut(s) 1024
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 6 cut(s) 48, 199, 640, 817, 918, 936
SseBI AGGCCT 1 cut(s) 510
SsiI CCGC 1 cut(s) 607
SspMI CTAG 3 cut(s) 83, 719, 894
StuI AGGCCT 1 cut(s) 510
StyD4I CCNGG 4 cut(s) 21, 376, 682, 1024
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 3 cut(s) 595, 835, 862
TaiI ACGT 1 cut(s) 180
TasI AATT 6 cut(s) 48, 199, 640, 817, 918, 936
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 4 cut(s) 127, 448, 464, 598
Tru1I TTAA 4 cut(s) 12, 198, 357, 624
Tru9I TTAA 4 cut(s) 12, 198, 357, 624
TscAI CASTG 5 cut(s) 154, 376, 598, 865, 954
TseFI GTSAC 2 cut(s) 856, 862
TseI GCWGC 5 cut(s) 101, 311, 395, 1031, 1112
Tsp45I GTSAC 2 cut(s) 856, 862
TspDTI ATGAA 2 cut(s) 531, 610
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 5 cut(s) 154, 376, 598, 865, 954
Vha464I CTTAAG 1 cut(s) 356
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 3 cut(s) 48, 918, 936
XceI RCATGY 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 995
XspI CTAG 3 cut(s) 83, 719, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.