Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000923

Physical Location & Seq

Genomic Coordinates Reverse (-)

8630430 .. 8631276

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGGTTTCTTTTGCCAACATCTATTGGAAGTCTTTAAAACCCCAAGTCTGTGTTGCAGAAGAGGCAGGGAAACAAGGGTCAATGAACCAAGCAATGAGGCCGCCAACCACAGCCCTTTGCCTCCTCTCCTTCCTTTTCTCCTCTCTAGTACTCCATACTCCCACCTTTGCCATCAAAAAGCATCCAAAGGTAGTCTCATTATTCTTGAACCAGGGAAGAAAATTACACACAACTCGATCATGGGATTTCTTGGGACTTGAGCAAGAGGGTGTTGTTCCACCCAATTCAATCTGGAAGAAGGCAAGATATGGTGAAGATTCGATCATAGGAAACCTTGATACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0016787 GO:0017171 GO:0019538 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0043170 GO:0044238 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

117

Amino Acids

12.95

Weight (kDa)

9.26

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59810
fragaria_vesca	FvH4_3g00161 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42041 FvH4_3g42350
malus_domestica	MD03G1039300.v1.1 MD10G1341300.v1.1 MD11G1039600.v1.1 MD14G1139100.v1.1
prunus_persica	Prupe.4G001800_v2.0.a1 Prupe.6G031400_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1
pyrus_communis	pycom03g03030 pycom11g03350 pycom11g03360 pycom11g03370 pycom17g11100
rosa_chinensis	RchiOBHm_Chr5g0000221 RchiOBHm_Chr5g0075241 RchiOBHm_Chr5g0075251
rosa_laevigata	RLG00000030851 RLG00000036541 RLG00000036542
rosa_multiflora	Rmu_co8057730.1_g000001 Rmu_co8132088.1_g000001 Rmu_sc0000770.1_g000063 Rmu_sc0021936.1_g000001 Rmu_sc0031527.1_g000001 Rmu_ssc0000243.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006310 Rroxscaffold_1G00075880 Rroxscaffold_3G00267190
rosa_rugosa	Rorug04G0382600 Rorug05G0437400 Rorug05G0437500 Rorug05G0437600 Rorug05G0437700 Rorug05G0437800
rosa_samantha	Rh5AG001500 Rh5AG494500 Rh5AG494600 Rh5BG002900 Rh5BG516100 Rh5BG516200 Rh5CG001800 Rh5CG539900 Rh5CG540000 Rh5DG001700 Rh5DG528800 Rh5DG528900
rosa_wichuraiana	Rw5G000200 Rw5G045880 Rw5G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	211, 291
AjnI	CCWGG	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	326
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	2 cut(s)	116, 133
BshFI	GGCC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	239, 324
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	239, 324
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	242, 327
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	2 cut(s)	239, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	2 cut(s)	103, 116
CviKI_1	RGCY	2 cut(s)	103, 116
CviQI	GTAC	1 cut(s)	152
DpnI	GATC	2 cut(s)	241, 326
DpnII	GATC	2 cut(s)	239, 324
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	246
FaiI	YATR	4 cut(s)	159, 244, 312, 329
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	246
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	326
Hpy188III	TCNNGA	2 cut(s)	208, 295
HpyAV	CCTTC	2 cut(s)	142, 295
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	239, 324
LpnPI	CCDG	5 cut(s)	54, 200, 227, 280, 330
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	149
MalI	GATC	2 cut(s)	241, 326
MboI	GATC	2 cut(s)	239, 324
MboII	GAAGA	4 cut(s)	74, 231, 310, 329
MluCI	AATT	2 cut(s)	224, 286
MnlI	CCTC	6 cut(s)	58, 93, 134, 137, 154, 262
MseI	TTAA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	2 cut(s)	239, 324
NlaIII	CATG	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	239, 324
ScaI	AGTACT	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	4 cut(s)	9, 170, 195, 339
SfaNI	GCATC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	224, 286
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	213
TaqI	TCGA	2 cut(s)	238, 323
TasI	AATT	2 cut(s)	224, 286
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	101
XspI	CTAG	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.