subtilisin-like protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1304 |
| Acc36I | ACCTGC | 1 cut(s) | 1304 |
| AccB1I | GGYRCC | 1 cut(s) | 787 |
| AccBSI | CCGCTC | 1 cut(s) | 641 |
| AccII | CGCG | 2 cut(s) | 762, 1944 |
| AciI | CCGC | 4 cut(s) | 639, 760, 1188, 1944 |
| AclWI | GGATC | 9 cut(s) | 147, 657, 670, 754, 1217, 1367, 1498, 1880, 1893 |
| AcoI | YGGCCR | 2 cut(s) | 464, 655 |
| AcsI | RAATTY | 8 cut(s) | 158, 358, 525, 899, 910, 1484, 1632, 2171 |
| AcuI | CTGAAG | 1 cut(s) | 1629 |
| AfaI | GTAC | 2 cut(s) | 98, 584 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 679, 797, 992, 1549 |
| AflIII | ACRYGT | 1 cut(s) | 1396 |
| AhlI | ACTAGT | 1 cut(s) | 1894 |
| AjnI | CCWGG | 5 cut(s) | 991, 1016, 1206, 1542, 1579 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 404, 436 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1207, 1239 |
| Alw21I | GWGCWC | 3 cut(s) | 109, 895, 1386 |
| Alw26I | GTCTC | 2 cut(s) | 882, 1075 |
| AlwI | GGATC | 9 cut(s) | 147, 657, 670, 754, 1217, 1367, 1498, 1880, 1893 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1319 |
| Ama87I | CYCGRG | 2 cut(s) | 753, 1470 |
| AoxI | GGCC | 7 cut(s) | 118, 464, 613, 655, 927, 1532, 1619 |
| ApoI | RAATTY | 8 cut(s) | 158, 358, 525, 899, 910, 1484, 1632, 2171 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2106, 2138 |
| AseI | ATTAAT | 1 cut(s) | 243 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2198 |
| AspA2I | CCTAGG | 1 cut(s) | 1226 |
| AspLEI | GCGC | 2 cut(s) | 1157, 1940 |
| AspS9I | GGNCC | 7 cut(s) | 119, 500, 614, 927, 983, 1532, 1619 |
| AsuC2I | CCSGG | 4 cut(s) | 702, 1649, 1890, 2103 |
| AsuHPI | GGTGA | 3 cut(s) | 1246, 1597, 2198 |
| AvaI | CYCGRG | 2 cut(s) | 753, 1470 |
| AvaII | GGWCC | 2 cut(s) | 500, 983 |
| AvrII | CCTAGG | 1 cut(s) | 1226 |
| BaeGI | GKGCMC | 1 cut(s) | 790 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 444, 477 |
| BalI | TGGCCA | 2 cut(s) | 466, 657 |
| BamHI | GGATCC | 2 cut(s) | 662, 1885 |
| BanI | GGYRCC | 1 cut(s) | 787 |
| BanII | GRGCYC | 2 cut(s) | 760, 2297 |
| BauI | CACGAG | 1 cut(s) | 642 |
| BbsI | GAAGAC | 1 cut(s) | 2064 |
| Bbv12I | GWGCWC | 3 cut(s) | 109, 895, 1386 |
| BccI | CCATC | 5 cut(s) | 647, 848, 1135, 2140, 2267 |
| BceAI | ACGGC | 2 cut(s) | 696, 1429 |
| BciT130I | CCWGG | 5 cut(s) | 993, 1018, 1208, 1544, 1581 |
| BclI | TGATCA | 1 cut(s) | 1962 |
| BcnI | CCSGG | 4 cut(s) | 702, 1649, 1890, 2103 |
| BcoDI | GTCTC | 2 cut(s) | 882, 1075 |
| BcuI | ACTAGT | 1 cut(s) | 1894 |
| BfaI | CTAG | 8 cut(s) | 234, 348, 1227, 1527, 1895, 1916, 2012, 2160 |
| BfmI | CTRYAG | 2 cut(s) | 279, 1320 |
| BfuAI | ACCTGC | 1 cut(s) | 1304 |
| BglII | AGATCT | 1 cut(s) | 1245 |
| BlnI | CCTAGG | 1 cut(s) | 1226 |
| Bme1390I | CCNGG | 9 cut(s) | 702, 993, 1018, 1208, 1544, 1581, 1649, 1890, 2103 |
| Bme18I | GGWCC | 2 cut(s) | 500, 983 |
| BmeT110I | CYCGRG | 2 cut(s) | 753, 1470 |
| BmgT120I | GGNCC | 7 cut(s) | 119, 500, 614, 927, 983, 1532, 1619 |
| BmrFI | CCNGG | 9 cut(s) | 702, 993, 1018, 1208, 1544, 1581, 1649, 1890, 2103 |
| BmrI | ACTGGG | 1 cut(s) | 1680 |
| BmsI | GCATC | 5 cut(s) | 304, 805, 829, 1190, 1706 |
| BmuI | ACTGGG | 1 cut(s) | 1680 |
| BpiI | GAAGAC | 1 cut(s) | 2064 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1855, 2220 |
| BpuEI | CTTGAG | 2 cut(s) | 208, 2223 |
| BpuMI | CCSGG | 4 cut(s) | 702, 1649, 1890, 2103 |
| Bsa29I | ATCGAT | 1 cut(s) | 1047 |
| BsaJI | CCNNGG | 8 cut(s) | 135, 658, 678, 992, 1016, 1207, 1226, 1580 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 696, 726 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 679, 797, 992, 1549 |
| Bse1I | ACTGG | 5 cut(s) | 35, 342, 460, 805, 1675 |
| Bse3DI | GCAATG | 3 cut(s) | 733, 1572, 1887 |
| BseBI | CCWGG | 5 cut(s) | 993, 1018, 1208, 1544, 1581 |
| BseCI | ATCGAT | 1 cut(s) | 1047 |
| BseDI | CCNNGG | 8 cut(s) | 135, 658, 678, 992, 1016, 1207, 1226, 1580 |
| BseGI | GGATG | 5 cut(s) | 131, 295, 414, 1181, 1795 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 679, 797, 992, 1549 |
| BseMI | GCAATG | 3 cut(s) | 733, 1572, 1887 |
| BseMII | CTCAG | 5 cut(s) | 1278, 1732, 1869, 2065, 2076 |
| BseNI | ACTGG | 5 cut(s) | 35, 342, 460, 805, 1675 |
| BseRI | GAGGAG | 1 cut(s) | 903 |
| BseSI | GKGCMC | 1 cut(s) | 790 |
| BseYI | CCCAGC | 1 cut(s) | 783 |
| BsgI | GTGCAG | 1 cut(s) | 987 |
| Bsh1236I | CGCG | 2 cut(s) | 762, 1944 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1047, 1051 |
| BshFI | GGCC | 7 cut(s) | 120, 466, 615, 657, 929, 1534, 1621 |
| BshNI | GGYRCC | 1 cut(s) | 787 |
| BshVI | ATCGAT | 1 cut(s) | 1047 |
| BsiEI | CGRYCG | 2 cut(s) | 1047, 1051 |
| BsiHKAI | GWGCWC | 3 cut(s) | 109, 895, 1386 |
| BsiHKCI | CYCGRG | 2 cut(s) | 753, 1470 |
| BsiSI | CCGG | 5 cut(s) | 702, 1648, 1745, 1889, 2103 |
| BslFI | GGGAC | 5 cut(s) | 491, 513, 589, 1009, 1905 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 679, 797, 992, 1549 |
| BsmAI | GTCTC | 2 cut(s) | 882, 1075 |
| BsmFI | GGGAC | 5 cut(s) | 491, 513, 589, 1009, 1905 |
| BsnI | GGCC | 7 cut(s) | 120, 466, 615, 657, 929, 1534, 1621 |
| BsoBI | CYCGRG | 2 cut(s) | 753, 1470 |
| Bsp1286I | GDGCHC | 6 cut(s) | 109, 760, 790, 895, 1386, 2297 |
| Bsp19I | CCATGG | 1 cut(s) | 658 |
| BspACI | CCGC | 4 cut(s) | 639, 760, 1188, 1944 |
| BspANI | GGCC | 7 cut(s) | 120, 466, 615, 657, 929, 1534, 1621 |
| BspCNI | CTCAG | 5 cut(s) | 1279, 1731, 1868, 2064, 2075 |
| BspDI | ATCGAT | 1 cut(s) | 1047 |
| BspFNI | CGCG | 2 cut(s) | 762, 1944 |
| BspHI | TCATGA | 1 cut(s) | 1767 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspMI | ACCTGC | 1 cut(s) | 1304 |
| BspPI | GGATC | 9 cut(s) | 147, 657, 670, 754, 1217, 1367, 1498, 1880, 1893 |
| BspQI | GCTCTTC | 1 cut(s) | 1286 |
| BspT107I | GGYRCC | 1 cut(s) | 787 |
| BsrBI | CCGCTC | 1 cut(s) | 641 |
| BsrDI | GCAATG | 3 cut(s) | 733, 1572, 1887 |
| BsrI | ACTGG | 5 cut(s) | 35, 342, 460, 805, 1675 |
| BssECI | CCNNGG | 8 cut(s) | 135, 658, 678, 992, 1016, 1207, 1226, 1580 |
| BssSI | CACGAG | 1 cut(s) | 642 |
| BssT1I | CCWWGG | 2 cut(s) | 658, 1226 |
| Bst2BI | CACGAG | 1 cut(s) | 642 |
| Bst2UI | CCWGG | 5 cut(s) | 993, 1018, 1208, 1544, 1581 |
| Bst4CI | ACNGT | 2 cut(s) | 1000, 1030 |
| Bst6I | CTCTTC | 4 cut(s) | 21, 261, 1286, 1825 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 287 |
| BstDEI | CTNAG | 7 cut(s) | 100, 1287, 1718, 1855, 2051, 2062, 2220 |
| BstDSI | CCRYGG | 3 cut(s) | 135, 658, 678 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1547 |
| BstF5I | GGATG | 5 cut(s) | 131, 295, 414, 1181, 1795 |
| BstFNI | CGCG | 2 cut(s) | 762, 1944 |
| BstHHI | GCGC | 2 cut(s) | 1157, 1940 |
| BstMAI | GTCTC | 2 cut(s) | 882, 1075 |
| BstMCI | CGRYCG | 2 cut(s) | 1047, 1051 |
| BstNI | CCWGG | 5 cut(s) | 993, 1018, 1208, 1544, 1581 |
| BstNSI | RCATGY | 4 cut(s) | 1175, 1400, 1689, 2123 |
| BstSCI | CCNGG | 9 cut(s) | 700, 991, 1016, 1206, 1542, 1579, 1647, 1888, 2101 |
| BstSFI | CTRYAG | 2 cut(s) | 279, 1320 |
| BstSLI | GKGCMC | 1 cut(s) | 790 |
| BstUI | CGCG | 2 cut(s) | 762, 1944 |
| BstV2I | GAAGAC | 1 cut(s) | 2064 |
| BstX2I | RGATCY | 4 cut(s) | 139, 662, 1245, 1885 |
| BstYI | RGATCY | 4 cut(s) | 139, 662, 1245, 1885 |
| Bsu15I | ATCGAT | 1 cut(s) | 1047 |
| BsuRI | GGCC | 7 cut(s) | 120, 466, 615, 657, 929, 1534, 1621 |
| BsuTUI | ATCGAT | 1 cut(s) | 1047 |
| BtgI | CCRYGG | 3 cut(s) | 135, 658, 678 |
| BtsCI | GGATG | 5 cut(s) | 131, 295, 414, 1181, 1795 |
| BtsI | GCAGTG | 2 cut(s) | 1773, 2310 |
| BtsIMutI | CAGTG | 7 cut(s) | 812, 1005, 1407, 1773, 2059, 2070, 2310 |
| BveI | ACCTGC | 1 cut(s) | 1304 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1319 |
| CciI | TCATGA | 1 cut(s) | 1767 |
| CfoI | GCGC | 2 cut(s) | 1157, 1940 |
| Cfr13I | GGNCC | 7 cut(s) | 119, 500, 614, 927, 983, 1532, 1619 |
| ClaI | ATCGAT | 1 cut(s) | 1047 |
| Csp6I | GTAC | 2 cut(s) | 97, 583 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1718, 1753 |
| CviQI | GTAC | 2 cut(s) | 97, 583 |
| DdeI | CTNAG | 7 cut(s) | 100, 1287, 1718, 1855, 2051, 2062, 2220 |
| DraI | TTTAAA | 1 cut(s) | 907 |
| EaeI | YGGCCR | 2 cut(s) | 464, 655 |
| Eam1104I | CTCTTC | 4 cut(s) | 21, 261, 1286, 1825 |
| EarI | CTCTTC | 4 cut(s) | 21, 261, 1286, 1825 |
| Eco130I | CCWWGG | 2 cut(s) | 658, 1226 |
| Eco24I | GRGCYC | 2 cut(s) | 760, 2297 |
| Eco32I | GATATC | 2 cut(s) | 309, 1570 |
| Eco47I | GGWCC | 2 cut(s) | 500, 983 |
| Eco57I | CTGAAG | 1 cut(s) | 1629 |
| Eco88I | CYCGRG | 2 cut(s) | 753, 1470 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1547 |
| EcoO109I | RGGNCCY | 3 cut(s) | 500, 927, 1532 |
| EcoRII | CCWGG | 5 cut(s) | 991, 1016, 1206, 1542, 1579 |
| EcoRV | GATATC | 2 cut(s) | 309, 1570 |
| EcoT14I | CCWWGG | 2 cut(s) | 658, 1226 |
| EcoT22I | ATGCAT | 2 cut(s) | 1183, 1699 |
| EcoT38I | GRGCYC | 2 cut(s) | 760, 2297 |
| ErhI | CCWWGG | 2 cut(s) | 658, 1226 |
| FaqI | GGGAC | 5 cut(s) | 491, 513, 589, 1009, 1905 |
| FauI | CCCGC | 1 cut(s) | 767 |
| FauNDI | CATATG | 1 cut(s) | 793 |
| FbaI | TGATCA | 1 cut(s) | 1962 |
| FokI | GGATG | 5 cut(s) | 118, 282, 421, 1168, 1802 |
| FriOI | GRGCYC | 2 cut(s) | 760, 2297 |
| FspBI | CTAG | 8 cut(s) | 234, 348, 1227, 1527, 1895, 1916, 2012, 2160 |
| GlaI | GCGC | 2 cut(s) | 1156, 1939 |
| GsaI | CCCAGC | 1 cut(s) | 787 |
| HaeIII | GGCC | 7 cut(s) | 120, 466, 615, 657, 929, 1534, 1621 |
| HapII | CCGG | 5 cut(s) | 702, 1648, 1745, 1889, 2103 |
| HhaI | GCGC | 2 cut(s) | 1157, 1940 |
| Hin6I | GCGC | 2 cut(s) | 1155, 1938 |
| HinP1I | GCGC | 2 cut(s) | 1155, 1938 |
| HincII | GTYRAC | 2 cut(s) | 533, 1402 |
| HindII | GTYRAC | 2 cut(s) | 533, 1402 |
| HindIII | AAGCTT | 1 cut(s) | 478 |
| HinfI | GANTC | 8 cut(s) | 146, 470, 858, 1473, 1554, 1741, 1817, 2060 |
| HpaII | CCGG | 5 cut(s) | 702, 1648, 1745, 1889, 2103 |
| HphI | GGTGA | 3 cut(s) | 1246, 1597, 2198 |
| Hpy166II | GTNNAC | 5 cut(s) | 97, 533, 1059, 1402, 1900 |
| Hpy188I | TCNGA | 4 cut(s) | 1132, 1639, 2137, 2272 |
| Hpy8I | GTNNAC | 5 cut(s) | 97, 533, 1059, 1402, 1900 |
| HpyCH4III | ACNGT | 2 cut(s) | 1000, 1030 |
| HpyCH4IV | ACGT | 1 cut(s) | 822 |
| HpyF3I | CTNAG | 7 cut(s) | 100, 1287, 1718, 1855, 2051, 2062, 2220 |
| HpySE526I | ACGT | 1 cut(s) | 822 |
| HspAI | GCGC | 2 cut(s) | 1155, 1938 |
| KflI | GGGWCCC | 1 cut(s) | 500 |
| Ksp22I | TGATCA | 1 cut(s) | 1962 |
| LguI | GCTCTTC | 1 cut(s) | 1286 |
| LmnI | GCTCC | 5 cut(s) | 104, 890, 1389, 1507, 2128 |
| LweI | GCATC | 5 cut(s) | 304, 805, 829, 1190, 1706 |
| MaeI | CTAG | 8 cut(s) | 234, 348, 1227, 1527, 1895, 1916, 2012, 2160 |
| MaeII | ACGT | 1 cut(s) | 822 |
| MaeIII | GTNAC | 5 cut(s) | 557, 644, 2065, 2083, 2279 |
| MbiI | CCGCTC | 1 cut(s) | 641 |
| MflI | RGATCY | 4 cut(s) | 139, 662, 1245, 1885 |
| MhlI | GDGCHC | 6 cut(s) | 109, 760, 790, 895, 1386, 2297 |
| MlsI | TGGCCA | 2 cut(s) | 466, 657 |
| MluNI | TGGCCA | 2 cut(s) | 466, 657 |
| MlyI | GAGTC | 5 cut(s) | 867, 1482, 1750, 1811, 2054 |
| MmeI | TCCRAC | 1 cut(s) | 2001 |
| Mox20I | TGGCCA | 2 cut(s) | 466, 657 |
| Mph1103I | ATGCAT | 2 cut(s) | 1183, 1699 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2198 |
| MscI | TGGCCA | 2 cut(s) | 466, 657 |
| MslI | CAYNNNNRTG | 6 cut(s) | 114, 243, 300, 407, 956, 1176 |
| Msp20I | TGGCCA | 2 cut(s) | 466, 657 |
| MspA1I | CMGCKG | 1 cut(s) | 971 |
| MspI | CCGG | 5 cut(s) | 702, 1648, 1745, 1889, 2103 |
| MspR9I | CCNGG | 9 cut(s) | 702, 993, 1018, 1208, 1544, 1581, 1649, 1890, 2103 |
| MvaI | CCWGG | 5 cut(s) | 993, 1018, 1208, 1544, 1581 |
| MvnI | CGCG | 2 cut(s) | 762, 1944 |
| NciI | CCSGG | 4 cut(s) | 702, 1649, 1890, 2103 |
| NcoI | CCATGG | 1 cut(s) | 658 |
| NdeI | CATATG | 1 cut(s) | 793 |
| NmuCI | GTSAC | 3 cut(s) | 644, 2065, 2279 |
| NsiI | ATGCAT | 2 cut(s) | 1183, 1699 |
| NspI | RCATGY | 4 cut(s) | 1175, 1400, 1689, 2123 |
| PaeI | GCATGC | 1 cut(s) | 1689 |
| PaeR7I | CTCGAG | 2 cut(s) | 753, 1470 |
| PagI | TCATGA | 1 cut(s) | 1767 |
| PaqCI | CACCTGC | 1 cut(s) | 1304 |
| PciI | ACATGT | 1 cut(s) | 1396 |
| PciSI | GCTCTTC | 1 cut(s) | 1286 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2198 |
| PfeI | GAWTC | 3 cut(s) | 146, 470, 1554 |
| PfoI | TCCNGGA | 3 cut(s) | 700, 1542, 1888 |
| Ple19I | CGATCG | 2 cut(s) | 1047, 1051 |
| PleI | GAGTC | 5 cut(s) | 866, 1481, 1749, 1811, 2054 |
| PpsI | GAGTC | 5 cut(s) | 866, 1481, 1749, 1811, 2054 |
| PpuMI | RGGWCCY | 1 cut(s) | 500 |
| PscI | ACATGT | 1 cut(s) | 1396 |
| PshBI | ATTAAT | 1 cut(s) | 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 500 |
| Psp6I | CCWGG | 5 cut(s) | 991, 1016, 1206, 1542, 1579 |
| PspFI | CCCAGC | 1 cut(s) | 783 |
| PspGI | CCWGG | 5 cut(s) | 991, 1016, 1206, 1542, 1579 |
| PspPI | GGNCC | 7 cut(s) | 119, 500, 614, 927, 983, 1532, 1619 |
| PspPPI | RGGWCCY | 1 cut(s) | 500 |
| PspXI | VCTCGAGB | 2 cut(s) | 753, 1470 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1319 |
| PsuI | RGATCY | 4 cut(s) | 139, 662, 1245, 1885 |
| PvuI | CGATCG | 2 cut(s) | 1047, 1051 |
| PvuII | CAGCTG | 1 cut(s) | 971 |
| RsaI | GTAC | 2 cut(s) | 98, 584 |
| RsaNI | GTAC | 2 cut(s) | 97, 583 |
| RseI | CAYNNNNRTG | 6 cut(s) | 114, 243, 300, 407, 956, 1176 |
| SapI | GCTCTTC | 1 cut(s) | 1286 |
| Sau96I | GGNCC | 7 cut(s) | 119, 500, 614, 927, 983, 1532, 1619 |
| SchI | GAGTC | 5 cut(s) | 867, 1482, 1750, 1811, 2054 |
| ScrFI | CCNGG | 9 cut(s) | 702, 993, 1018, 1208, 1544, 1581, 1649, 1890, 2103 |
| SduI | GDGCHC | 6 cut(s) | 109, 760, 790, 895, 1386, 2297 |
| SfaNI | GCATC | 5 cut(s) | 304, 805, 829, 1190, 1706 |
| SfcI | CTRYAG | 2 cut(s) | 279, 1320 |
| Sfr274I | CTCGAG | 2 cut(s) | 753, 1470 |
| SinI | GGWCC | 2 cut(s) | 500, 983 |
| SlaI | CTCGAG | 2 cut(s) | 753, 1470 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 114, 243, 300, 407, 956, 1176 |
| SmlI | CTYRAG | 4 cut(s) | 187, 753, 1470, 2238 |
| SmoI | CTYRAG | 4 cut(s) | 187, 753, 1470, 2238 |
| SpeI | ACTAGT | 1 cut(s) | 1894 |
| SphI | GCATGC | 1 cut(s) | 1689 |
| SsiI | CCGC | 4 cut(s) | 639, 760, 1188, 1944 |
| SspMI | CTAG | 8 cut(s) | 234, 348, 1227, 1527, 1895, 1916, 2012, 2160 |
| StyD4I | CCNGG | 9 cut(s) | 700, 991, 1016, 1206, 1542, 1579, 1647, 1888, 2101 |
| StyI | CCWWGG | 2 cut(s) | 658, 1226 |
| TaaI | ACNGT | 2 cut(s) | 1000, 1030 |
| TaiI | ACGT | 1 cut(s) | 825 |
| TaqI | TCGA | 5 cut(s) | 144, 754, 861, 1047, 1471 |
| TatI | WGTACW | 1 cut(s) | 96 |
| TfiI | GAWTC | 3 cut(s) | 146, 470, 1554 |
| TscAI | CASTG | 7 cut(s) | 812, 1005, 1414, 1780, 2059, 2070, 2310 |
| TseFI | GTSAC | 3 cut(s) | 644, 2065, 2279 |
| Tsp45I | GTSAC | 3 cut(s) | 644, 2065, 2279 |
| TspDTI | ATGAA | 7 cut(s) | 79, 152, 384, 425, 504, 810, 1512 |
| TspGWI | ACGGA | 1 cut(s) | 124 |
| TspRI | CASTG | 7 cut(s) | 812, 1005, 1414, 1780, 2059, 2070, 2310 |
| VpaK11BI | GGWCC | 2 cut(s) | 500, 983 |
| VspI | ATTAAT | 1 cut(s) | 243 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1547 |
| XapI | RAATTY | 8 cut(s) | 158, 358, 525, 899, 910, 1484, 1632, 2171 |
| XceI | RCATGY | 4 cut(s) | 1175, 1400, 1689, 2123 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1453 |
| XhoI | CTCGAG | 2 cut(s) | 753, 1470 |
| XmaJI | CCTAGG | 1 cut(s) | 1226 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2198 |
| XspI | CTAG | 8 cut(s) | 234, 348, 1227, 1527, 1895, 1916, 2012, 2160 |
| Zsp2I | ATGCAT | 2 cut(s) | 1183, 1699 |