Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000923

Physical Location & Seq

Genomic Coordinates Forward (+)

60786347 .. 60787513

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0437600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTATGTTGAAGTATTTGCTTACAACAGCGTCCGTGTTCATCTCTCTTTTGGTTCCGGGCATGCGCGGTGACGACATGACGACTTGGTTTACTGGTGCACATGCGTCGTTGTACGGCGACATGCAGGGCAGAGGAACCATGGAGGGGGGATGCGGATATGGTGATCTCAATAAACGAGAATATAACCTGCAGACAGCAGCTCTCAGCGAAGCACTATTCAACGACGGCCTTGCTTGTGGCGCTTGTTTCGCCATCATGTGTGTCGATGATACGAAAGGGTGCAAACCCAGTGCTGGTTCTGCGGTAGTTACTGCAACCGATTATTGCCCCCCAATTTATACTAAGCCTCCCAATGGAACCAACAACTGGTGCAACCCACCATTGAAACACTTCAAGTTAAGCATGCCAATGTTCACAAGAATCGCAGAAGAAAAGGTTGGGGTGGTACCGGTTGTATATCGCAGAGTCCCGTGTGCTAAGGAGGGAGGGGTTAAGTTCCAATTATTCAAGGGAAACTCTAATTTGATGCGTGTGTTATTGTACAATGTCGCCGGTGCTGGTGATGTTTCTAATGTCAAAATTAAGGGCTCTGTTATTTCCGGTTGGCTTCAGATGTCACGAATTCAGGGACAAACTTGGGAGACTGGAACTGACTTACAAGGCCAAAGCTTGTCGTTCCAAGTTACTACTAGTGATGGAAAGATGGTAGAGTTTGATAATGTTGTTGACAAAACTTGGCAATTCGGTGAGACCTTTGATGGGATCAAGAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

259

Amino Acids

28.19

Weight (kDa)

7.49

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	45 - 159	1.8e-06	EXPB1-like domain 1
DPBB_1	PF03330	66 - 154	1.6e-17	Lytic transglycolase
Expansin_C	PF01357	171 - 243	1.3e-20	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59810
fragaria_vesca	FvH4_3g00161 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42041 FvH4_3g42350
malus_domestica	MD03G1039300.v1.1 MD10G1341300.v1.1 MD11G1039600.v1.1 MD14G1139100.v1.1
prunus_persica	Prupe.4G001800_v2.0.a1 Prupe.6G031400_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1
pyrus_communis	pycom03g03030 pycom11g03350 pycom11g03360 pycom11g03370 pycom17g11100
rosa_chinensis	RchiOBHm_Chr5g0000221 RchiOBHm_Chr5g0075241 RchiOBHm_Chr5g0075251
rosa_laevigata	RLG00000030851 RLG00000036541 RLG00000036542
rosa_multiflora	Rmu_co8057730.1_g000001 Rmu_co8132088.1_g000001 Rmu_sc0000770.1_g000063 Rmu_sc0021936.1_g000001 Rmu_sc0031527.1_g000001 Rmu_ssc0000243.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006310 Rroxscaffold_1G00075880 Rroxscaffold_3G00267190
rosa_rugosa	Rorug04G0382600 Rorug05G0437400 Rorug05G0437500 Rorug05G0437600 Rorug05G0437700 Rorug05G0437800
rosa_samantha	Rh5AG001500 Rh5AG494500 Rh5AG494600 Rh5BG002900 Rh5BG516100 Rh5BG516200 Rh5CG001800 Rh5CG539900 Rh5CG540000 Rh5DG001700 Rh5DG528800 Rh5DG528900
rosa_wichuraiana	Rw5G000200 Rw5G045880 Rw5G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccII	CGCG	1 cut(s)	69
AciI	CCGC	3 cut(s)	69, 156, 305
AclWI	GGATC	1 cut(s)	773
AcsI	RAATTY	2 cut(s)	624, 772
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	3 cut(s)	116, 450, 545
AfiI	CCNNNNNNNGG	5 cut(s)	147, 296, 356, 369, 762
AgeI	ACCGGT	1 cut(s)	451
AgsI	TTSAA	5 cut(s)	13, 223, 388, 397, 511
AhlI	ACTAGT	1 cut(s)	692
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	2 cut(s)	203, 672
AluI	AGCT	2 cut(s)	203, 672
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	638, 746
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	773
AoxI	GGCC	2 cut(s)	229, 664
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	624, 772
AsiGI	ACCGGT	1 cut(s)	451
Asp700I	GAANNNNTTC	1 cut(s)	392
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	69, 245
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	83, 176, 575, 761
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	4 cut(s)	263, 692, 700, 755
BceAI	ACGGC	2 cut(s)	133, 244
BcgI	CGANNNNNNTGC	4 cut(s)	90, 124, 215, 249
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	638, 746
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	4 cut(s)	57, 139, 361, 450
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	143, 519
BmuI	ACTGGG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	2 cut(s)	451, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 296, 356, 369, 762
Bse118I	RCCGGY	2 cut(s)	451, 554
Bse1I	ACTGG	4 cut(s)	100, 291, 374, 652
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	5 cut(s)	147, 296, 356, 369, 762
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	4 cut(s)	100, 291, 374, 652
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	231, 666
BshNI	GGYRCC	1 cut(s)	448
BshTI	ACCGGT	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	4 cut(s)	59, 452, 555, 603
BslFI	GGGAC	2 cut(s)	455, 645
BslI	CCNNNNNNNGG	5 cut(s)	147, 296, 356, 369, 762
BsmAI	GTCTC	2 cut(s)	638, 746
BsmFI	GGGAC	2 cut(s)	455, 645
BsnI	GGCC	2 cut(s)	231, 666
Bso31I	GGTCTC	1 cut(s)	746
Bsp1286I	GDGCHC	2 cut(s)	103, 593
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	166, 765
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	3 cut(s)	69, 156, 305
BspANI	GGCC	2 cut(s)	231, 666
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	57, 139, 361, 450
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	773
BspT107I	GGYRCC	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	746
BsrFI	RCCGGY	2 cut(s)	451, 554
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	100, 291, 374, 652
BssAI	RCCGGY	2 cut(s)	451, 554
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	166, 765
BssT1I	CCWWGG	1 cut(s)	141
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	65, 407
BstDEI	CTNAG	3 cut(s)	206, 345, 480
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	69, 245
BstKTI	GATC	2 cut(s)	169, 768
BstMAI	GTCTC	2 cut(s)	638, 746
BstMBI	GATC	2 cut(s)	166, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 251, 302
BstNSI	RCATGY	4 cut(s)	67, 107, 127, 409
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	231, 666
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	65, 407
CfoI	GCGC	2 cut(s)	69, 245
Cfr10I	RCCGGY	2 cut(s)	451, 554
CseI	GACGC	2 cut(s)	21, 96
Csp6I	GTAC	3 cut(s)	115, 449, 544
CspAI	ACCGGT	1 cut(s)	451
CviAII	CATG	7 cut(s)	64, 79, 104, 124, 142, 259, 406
CviJI	RGCY	8 cut(s)	5, 203, 231, 349, 591, 610, 666, 672
CviKI_1	RGCY	8 cut(s)	5, 203, 231, 349, 591, 610, 666, 672
CviQI	GTAC	3 cut(s)	115, 449, 544
DdeI	CTNAG	3 cut(s)	206, 345, 480
DpnI	GATC	2 cut(s)	168, 767
DpnII	GATC	2 cut(s)	166, 765
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	7 cut(s)	67, 82, 107, 127, 145, 262, 409
FaqI	GGGAC	2 cut(s)	455, 645
FatI	CATG	7 cut(s)	63, 78, 103, 123, 141, 258, 405
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	2 cut(s)	68, 244
GluI	GCNGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	231, 666
HapII	CCGG	4 cut(s)	59, 452, 555, 603
HgaI	GACGC	2 cut(s)	21, 96
HhaI	GCGC	2 cut(s)	69, 245
Hin1II	CATG	7 cut(s)	67, 82, 107, 127, 145, 262, 409
Hin6I	GCGC	2 cut(s)	67, 243
HinP1I	GCGC	2 cut(s)	67, 243
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	2 cut(s)	423, 468
HpaII	CCGG	4 cut(s)	59, 452, 555, 603
HphI	GGTGA	4 cut(s)	83, 176, 575, 761
Hpy166II	GTNNAC	4 cut(s)	93, 101, 417, 730
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	2 cut(s)	621, 769
Hpy8I	GTNNAC	4 cut(s)	93, 101, 417, 730
Hpy99I	CGWCG	2 cut(s)	112, 230
HpyCH4V	TGCA	6 cut(s)	101, 127, 193, 285, 317, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 251, 302
HpyF3I	CTNAG	3 cut(s)	206, 345, 480
Hsp92II	CATG	7 cut(s)	67, 82, 107, 127, 145, 262, 409
HspAI	GCGC	2 cut(s)	67, 243
KpnI	GGTACC	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	166, 765
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	143, 519
MaeI	CTAG	1 cut(s)	693
MaeIII	GTNAC	4 cut(s)	71, 310, 618, 685
MalI	GATC	2 cut(s)	168, 767
MboI	GATC	2 cut(s)	166, 765
MboII	GAAGA	1 cut(s)	443
MhlI	GDGCHC	2 cut(s)	103, 593
MluCI	AATT	7 cut(s)	336, 503, 523, 582, 624, 743, 772
MlyI	GAGTC	1 cut(s)	477
MnlI	CCTC	5 cut(s)	128, 139, 360, 478, 482
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	3 cut(s)	401, 495, 585
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	4 cut(s)	59, 452, 555, 603
MspR9I	CCNGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	242, 251, 302
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	166, 765
NlaIII	CATG	7 cut(s)	67, 82, 107, 127, 145, 262, 409
NlaIV	GGNNCC	4 cut(s)	57, 139, 361, 450
NmuCI	GTSAC	2 cut(s)	71, 618
NspI	RCATGY	4 cut(s)	67, 107, 127, 409
PaeI	GCATGC	2 cut(s)	67, 409
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	423
PflMI	CCANNNNNTGG	1 cut(s)	369
PinAI	ACCGGT	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PspN4I	GGNNCC	4 cut(s)	57, 139, 361, 450
PstI	CTGCAG	1 cut(s)	195
RsaI	GTAC	3 cut(s)	116, 450, 545
RsaNI	GTAC	3 cut(s)	115, 449, 544
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	401, 495, 585
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	166, 765
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	103, 593
SetI	ASST	5 cut(s)	192, 205, 441, 674, 758
SfaNI	GCATC	2 cut(s)	143, 519
SfcI	CTRYAG	1 cut(s)	191
SgrAI	CRCCGGYG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	692
SphI	GCATGC	2 cut(s)	67, 409
Sse9I	AATT	7 cut(s)	336, 503, 523, 582, 624, 743, 772
SsiI	CCGC	3 cut(s)	69, 156, 305
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	141
TaqI	TCGA	1 cut(s)	267
TasI	AATT	7 cut(s)	336, 503, 523, 582, 624, 743, 772
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	401, 495, 585
Tru9I	TTAA	3 cut(s)	401, 495, 585
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	71, 618
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	2 cut(s)	71, 618
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	369
VneI	GTGCAC	1 cut(s)	99
XapI	RAATTY	2 cut(s)	624, 772
XceI	RCATGY	4 cut(s)	67, 107, 127, 409
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.