Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000923

Physical Location & Seq

Genomic Coordinates Reverse (-)

84133080 .. 84137449

Gene Structure 4370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG494500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGGTGCTTTCATCTCTACCTCCATTACTATTATTATCAGCTCTTTTGTTCTCTCTGTTGCAGACACCTACCCTTTCCATTAAAAAGCCATATATAGTGTACTTAGGAGCACATTCTCATGGTCCAAACCCATCATCTGTTGATCTCGATTTTGTCAGAAATTTTCACTACAATTTTCTGGGGTCATTCTTGAGAAGCAATAAAAGTGCCAAAGATGTGATGTTCTACTCCTATACTAGACACATTAATGGTTTTGCTGCAATTCTTGAAGAGGAAGAAGCTTCTCAGATTGCTAAGGATCCAAATGTGATATCAGTCTTCCCTAACAAGGGAAGAAAGCTGCAAACTACCCGGTCATGGAATTTTCTTGGATTAGAGAGAAATGGACTGATTCCTTCAGACTCCATTTGGAAGAAAGCAAGGTTTGGCGAAGATACAATAATTGCAAACATAGATACTGGTGTTTGGCCAGAATCCAAAAGCTTTAGTGATGAAGGGCTGGGACCTGTCCCTTCCAAGTGGCGTGGAACTTGTCAACATGACACAAAGCAAGTTCATTGCAACAGAAAGCTGATTGGAACTAGGTACTTTAATAATGGTCTTGCCATGTATGCCGGCCCTCTCAACTCGTCGTATTCCACTGTTCGCGACTACGATGGTCATGGATCACATACCCTATCCACGGCTGCGGGTGGCTTTGTTCCAGGAGTTAGTTTTTTTGGCAATGGCAATGGAACCACCAAGGGTGGCTCTCCTCAAGCCCGTGTTGCTGCATATAAGGTATGCTGGCCACCATTTGAAGGTGTTGGGTGCTTCGAGGCAGACATCTTAGCTGCCTTTGATGCTGCAATAAGTGACGGTGTCGATGTAATCTCTGTGTCTCTTGGTGGAGGAACAGAGGAGTTTTTCAACAATGCAATTTCAATAGGGTCCTTCCATGCAGTTAAAAATGGCATTGTTGTGGTTAGTGCAGCTGGAAACTCTGGACCAAATCCAGGGACAGTATTAAACTTGTCGCCATGGTTAGTAACAGTTGGTGCTAGCACCATTGATCGAGAGTTCACAAGCTATGTTGTCCTCGGAAACAAAAAGCAATTGAAGGGAGCAAGCCTTTCAGCTAAAGGCTTACCATTTGAAATGTTTTACCCGTTGATCAGTGCTGCAGATGCGAGAGATGCTGATGCATCCACTGGAAAAGCTGAAATTTGCAATGTTGGAGCTCTCGATCCTAGGAAAGTAAAGGGAAAGATTTTAGTGTGCGTTCAAGAATACAACGATAATGAAAGAACCGAGAAGAGCATGCAGGCTGATATTGCAGCTACAACACAAGATGACAGCAATGAACCGATGCTTGACTCGTCTTATTTGAAGGCAACACCATTTGCTTATGGTGCAGGACACATTCAACCAAACAACGCAATGGACCCGGGGTTAATTTATAACCTAACAACACTTGATTACTTGAATTTCTTATGTGCTCGAGGATACAATGAAACAATGATCAAATCATTCTCCAATCCACCTTTCAAATGTCCCAAGTCTTTCAGTCTAGGAGACTTCAACTACCCAGCAATTGCAATTCCTAATCTCGGTGCAGAGTTAGTGACCGTTACTAGAAGAAAAGTTACAAATGTCGGATCACCTGGCACGTACAAAGTGTGCGTCAAGGCACCACCAGAAGTAATGGTTTTGGTTAAACCTAGAAGCTTGAAATTTGAGAGTATTGGTGAAGTGAAAAAGTTCAAAGTTATATTCAAAGCTAAGGTTAAGGGTAAGCCTCGACGGTATGCATTTGGAGAGTTGATGTGGTCAGATGGCAATCACCATGTAAAGATTCCTCTTGCAGTGAAGCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

619

Amino Acids

67.24

Weight (kDa)

8.98

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	31 - 115	2.7e-15	Peptidase inhibitor I9
Peptidase_S8	PF00082	143 - 363	5.2e-16	Subtilase family
fn3_6	PF17766	519 - 616	1.1e-24	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59810
fragaria_vesca	FvH4_3g00161 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42040 FvH4_3g42041 FvH4_3g42350
malus_domestica	MD03G1039300.v1.1 MD10G1341300.v1.1 MD11G1039600.v1.1 MD14G1139100.v1.1
prunus_persica	Prupe.4G001800_v2.0.a1 Prupe.6G031400_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1 Prupe.6G031500_v2.0.a1
pyrus_communis	pycom03g03030 pycom11g03350 pycom11g03360 pycom11g03370 pycom17g11100
rosa_chinensis	RchiOBHm_Chr5g0000221 RchiOBHm_Chr5g0075241 RchiOBHm_Chr5g0075251
rosa_laevigata	RLG00000030851 RLG00000036541 RLG00000036542
rosa_multiflora	Rmu_co8057730.1_g000001 Rmu_co8132088.1_g000001 Rmu_sc0000770.1_g000063 Rmu_sc0021936.1_g000001 Rmu_sc0031527.1_g000001 Rmu_ssc0000243.1_g000009
rosa_roxburghii	Rroxscaffold_1G00006310 Rroxscaffold_1G00075880 Rroxscaffold_3G00267190
rosa_rugosa	Rorug04G0382600 Rorug05G0437400 Rorug05G0437500 Rorug05G0437600 Rorug05G0437700 Rorug05G0437800
rosa_samantha	Rh5AG001500 Rh5AG494500 Rh5AG494600 Rh5BG002900 Rh5BG516100 Rh5BG516200 Rh5CG001800 Rh5CG539900 Rh5CG540000 Rh5DG001700 Rh5DG528800 Rh5DG528900
rosa_wichuraiana	Rw5G000200 Rw5G045880 Rw5G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1440
AccB1I	GGYRCC	1 cut(s)	1669
AccII	CGCG	1 cut(s)	648
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	5 cut(s)	293, 306, 673, 1220, 1645
AcoI	YGGCCR	2 cut(s)	467, 788
AcsI	RAATTY	5 cut(s)	160, 361, 1203, 1465, 1712
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	3 cut(s)	101, 587, 1652
AfiI	CCNNNNNNNGG	7 cut(s)	328, 329, 357, 682, 800, 995, 1589
AjnI	CCWGG	3 cut(s)	703, 994, 1642
AjuI	GAANNNNNNNTTGG	2 cut(s)	1508, 1540
Alw21I	GWGCWC	3 cut(s)	112, 1222, 1480
Alw26I	GTCTC	2 cut(s)	885, 1548
AlwI	GGATC	5 cut(s)	293, 306, 673, 1220, 1645
Ama87I	CYCGRG	2 cut(s)	1426, 1479
AoxI	GGCC	3 cut(s)	467, 616, 788
ApeKI	GCWGC	9 cut(s)	257, 340, 686, 770, 833, 845, 971, 1160, 1316
ApoI	RAATTY	5 cut(s)	160, 361, 1203, 1465, 1712
ArsI	GACNNNNNNTTYG	2 cut(s)	1647, 1679
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	1739
AspA2I	CCTAGG	1 cut(s)	1229
AspS9I	GGNCC	6 cut(s)	122, 503, 617, 930, 986, 1423
AsuC2I	CCSGG	3 cut(s)	352, 1427, 1428
AsuHPI	GGTGA	3 cut(s)	1632, 1739, 1814
AsuNHI	GCTAGC	1 cut(s)	1040
AvaI	CYCGRG	2 cut(s)	1426, 1479
AvaII	GGWCC	5 cut(s)	122, 503, 930, 986, 1423
AvrII	CCTAGG	1 cut(s)	1229
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BalI	TGGCCA	2 cut(s)	469, 790
BamHI	GGATCC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	1669
BanII	GRGCYC	1 cut(s)	1222
BarI	GAAGNNNNNNTAC	2 cut(s)	1609, 1641
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	3 cut(s)	112, 1222, 1480
BbvI	GCAGC	9 cut(s)	244, 327, 673, 757, 820, 832, 983, 1147, 1328
BccI	CCATC	3 cut(s)	139, 650, 1808
BceAI	ACGGC	1 cut(s)	699
BciT130I	CCWGG	3 cut(s)	705, 996, 1644
BciVI	GTATCC	1 cut(s)	1478
BclI	TGATCA	2 cut(s)	1152, 1500
BcnI	CCSGG	3 cut(s)	352, 1427, 1428
BcoDI	GTCTC	2 cut(s)	885, 1548
BfaI	CTAG	8 cut(s)	237, 582, 1041, 1230, 1550, 1614, 1701, 1858
BfmI	CTRYAG	1 cut(s)	1161
BfuI	GTATCC	1 cut(s)	1478
BisI	GCNGC	9 cut(s)	258, 341, 687, 771, 834, 846, 972, 1161, 1317
BlnI	CCTAGG	1 cut(s)	1229
BlsI	GCNGC	9 cut(s)	259, 342, 688, 772, 835, 847, 973, 1162, 1318
Bme1390I	CCNGG	6 cut(s)	352, 705, 996, 1427, 1428, 1644
Bme18I	GGWCC	5 cut(s)	122, 503, 930, 986, 1423
BmeT110I	CYCGRG	2 cut(s)	1426, 1479
BmgT120I	GGNCC	6 cut(s)	122, 503, 617, 930, 986, 1423
BmiI	GGNNCC	6 cut(s)	300, 504, 736, 931, 1425, 1671
BmrFI	CCNGG	6 cut(s)	352, 705, 996, 1427, 1428, 1644
BmsI	GCATC	6 cut(s)	832, 1156, 1165, 1171, 1193, 1338
BmtI	GCTAGC	1 cut(s)	1044
BpiI	GAAGAC	1 cut(s)	310
Bpu10I	CCTNAGC	2 cut(s)	294, 1761
BpuEI	CTTGAG	2 cut(s)	211, 741
BpuMI	CCSGG	3 cut(s)	352, 1427, 1428
BsaAI	YACGTR	1 cut(s)	1650
BsaBI	GATNNNNATC	1 cut(s)	1818
BsaJI	CCNNGG	8 cut(s)	681, 741, 995, 1019, 1078, 1229, 1426, 1427
Bsc4I	CCNNNNNNNGG	7 cut(s)	328, 329, 357, 682, 800, 995, 1589
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	463, 1195
Bse3DI	GCAATG	6 cut(s)	556, 730, 736, 1216, 1345, 1425
Bse8I	GATNNNNATC	1 cut(s)	1818
BseBI	CCWGG	3 cut(s)	705, 996, 1644
BseDI	CCNNGG	8 cut(s)	681, 741, 995, 1019, 1078, 1229, 1426, 1427
BseGI	GGATG	1 cut(s)	1184
BseJI	GATNNNNATC	1 cut(s)	1818
BseLI	CCNNNNNNNGG	7 cut(s)	328, 329, 357, 682, 800, 995, 1589
BseMI	GCAATG	6 cut(s)	556, 730, 736, 1216, 1345, 1425
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	463, 1195
BseRI	GAGGAG	2 cut(s)	744, 914
BseXI	GCAGC	9 cut(s)	244, 327, 673, 757, 820, 832, 983, 1147, 1328
BseYI	CCCAGC	2 cut(s)	499, 1567
BsgI	GTGCAG	3 cut(s)	990, 1413, 1614
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	469, 618, 790
BshNI	GGYRCC	1 cut(s)	1669
BsiHKAI	GWGCWC	3 cut(s)	112, 1222, 1480
BsiHKCI	CYCGRG	2 cut(s)	1426, 1479
BsiSI	CCGG	3 cut(s)	352, 615, 1427
BslFI	GGGAC	4 cut(s)	494, 516, 1012, 1518
BslI	CCNNNNNNNGG	7 cut(s)	328, 329, 357, 682, 800, 995, 1589
BsmAI	GTCTC	2 cut(s)	885, 1548
BsmFI	GGGAC	4 cut(s)	494, 516, 1012, 1518
BsnI	GGCC	3 cut(s)	469, 618, 790
BsoBI	CYCGRG	2 cut(s)	1426, 1479
Bsp1286I	GDGCHC	3 cut(s)	112, 1222, 1480
Bsp143I	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
Bsp19I	CCATGG	1 cut(s)	1019
Bsp68I	TCGCGA	1 cut(s)	648
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	3 cut(s)	469, 618, 790
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	6 cut(s)	300, 504, 736, 931, 1425, 1671
BspMAI	CTGCAG	1 cut(s)	1165
BspOI	GCTAGC	1 cut(s)	1044
BspPI	GGATC	5 cut(s)	293, 306, 673, 1220, 1645
BspQI	GCTCTTC	1 cut(s)	1289
BspT107I	GGYRCC	1 cut(s)	1669
BsrDI	GCAATG	6 cut(s)	556, 730, 736, 1216, 1345, 1425
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	463, 1195
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	8 cut(s)	681, 741, 995, 1019, 1078, 1229, 1426, 1427
BssMI	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
BssT1I	CCWWGG	3 cut(s)	741, 1019, 1229
Bst2UI	CCWGG	3 cut(s)	705, 996, 1644
Bst4CI	ACNGT	6 cut(s)	643, 860, 1003, 1033, 1609, 1785
Bst6I	CTCTTC	2 cut(s)	264, 1289
BstBAI	YACGTR	1 cut(s)	1650
BstC8I	GCNNGC	6 cut(s)	616, 788, 1042, 1108, 1301, 1305
BstDEI	CTNAG	5 cut(s)	103, 285, 294, 829, 1761
BstDSI	CCRYGG	2 cut(s)	681, 1019
BstF5I	GGATG	1 cut(s)	1184
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	8 cut(s)	145, 301, 668, 1054, 1155, 1228, 1503, 1640
BstMAI	GTCTC	2 cut(s)	885, 1548
BstMBI	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
BstMWI	GCNNNNNNNGC	7 cut(s)	611, 767, 842, 1166, 1175, 1313, 1391
BstNI	CCWGG	3 cut(s)	705, 996, 1644
BstNSI	RCATGY	1 cut(s)	1303
BstSCI	CCNGG	6 cut(s)	350, 703, 994, 1425, 1426, 1642
BstSFI	CTRYAG	1 cut(s)	1161
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	9 cut(s)	244, 327, 673, 757, 820, 832, 983, 1147, 1328
BstV2I	GAAGAC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	1478
BsuRI	GGCC	3 cut(s)	469, 618, 790
BtgI	CCRYGG	2 cut(s)	681, 1019
BtsCI	GGATG	1 cut(s)	1184
BtsI	GCAGTG	1 cut(s)	1851
BtsIMutI	CAGTG	4 cut(s)	639, 1162, 1188, 1851
BtuMI	TCGCGA	1 cut(s)	648
Cac8I	GCNNGC	6 cut(s)	616, 788, 1042, 1108, 1301, 1305
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	6 cut(s)	122, 503, 617, 930, 986, 1423
Cfr9I	CCCGGG	1 cut(s)	1426
CseI	GACGC	1 cut(s)	1651
Csp6I	GTAC	3 cut(s)	100, 586, 1651
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	9 cut(s)	119, 357, 539, 607, 662, 938, 1020, 1300, 1826
CviQI	GTAC	3 cut(s)	100, 586, 1651
DdeI	CTNAG	5 cut(s)	103, 285, 294, 829, 1761
DpnI	GATC	8 cut(s)	144, 300, 667, 1053, 1154, 1227, 1502, 1639
DpnII	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
EaeI	YGGCCR	2 cut(s)	467, 788
Eam1104I	CTCTTC	2 cut(s)	264, 1289
EarI	CTCTTC	2 cut(s)	264, 1289
Ecl136II	GAGCTC	1 cut(s)	1220
Eco130I	CCWWGG	3 cut(s)	741, 1019, 1229
Eco24I	GRGCYC	1 cut(s)	1222
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	5 cut(s)	122, 503, 930, 986, 1423
Eco53kI	GAGCTC	1 cut(s)	1220
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	2 cut(s)	1426, 1479
EcoICRI	GAGCTC	1 cut(s)	1220
EcoO109I	RGGNCCY	2 cut(s)	503, 930
EcoRII	CCWGG	3 cut(s)	703, 994, 1642
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	3 cut(s)	741, 1019, 1229
EcoT22I	ATGCAT	2 cut(s)	1186, 1792
EcoT38I	GRGCYC	1 cut(s)	1222
ErhI	CCWWGG	3 cut(s)	741, 1019, 1229
FaeI	CATG	9 cut(s)	122, 360, 542, 610, 665, 941, 1023, 1303, 1829
FaqI	GGGAC	4 cut(s)	494, 516, 1012, 1518
FatI	CATG	9 cut(s)	118, 356, 538, 606, 661, 937, 1019, 1299, 1825
FauI	CCCGC	1 cut(s)	682
FbaI	TGATCA	2 cut(s)	1152, 1500
Fnu4HI	GCNGC	9 cut(s)	258, 341, 687, 771, 834, 846, 972, 1161, 1317
FokI	GGATG	1 cut(s)	1171
FriOI	GRGCYC	1 cut(s)	1222
Fsp4HI	GCNGC	9 cut(s)	258, 341, 687, 771, 834, 846, 972, 1161, 1317
FspBI	CTAG	8 cut(s)	237, 582, 1041, 1230, 1550, 1614, 1701, 1858
GluI	GCNGC	9 cut(s)	258, 341, 687, 771, 834, 846, 972, 1161, 1317
GsaI	CCCAGC	2 cut(s)	503, 1571
HaeIII	GGCC	3 cut(s)	469, 618, 790
HapII	CCGG	3 cut(s)	352, 615, 1427
HgaI	GACGC	1 cut(s)	1651
Hin1II	CATG	9 cut(s)	122, 360, 542, 610, 665, 941, 1023, 1303, 1829
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HindIII	AAGCTT	3 cut(s)	279, 481, 1705
HinfI	GANTC	5 cut(s)	391, 401, 473, 1355, 1834
HpaII	CCGG	3 cut(s)	352, 615, 1427
HphI	GGTGA	3 cut(s)	1632, 1739, 1814
Hpy166II	GTNNAC	3 cut(s)	100, 536, 1062
Hpy188I	TCNGA	6 cut(s)	158, 288, 400, 1082, 1637, 1813
Hpy188III	TCNNGA	8 cut(s)	146, 190, 266, 647, 984, 1055, 1223, 1265
Hpy8I	GTNNAC	3 cut(s)	100, 536, 1062
Hpy99I	CGWCG	2 cut(s)	634, 1785
HpyAV	CCTTC	7 cut(s)	405, 488, 522, 794, 943, 1093, 1363
HpyCH4III	ACNGT	6 cut(s)	643, 860, 1003, 1033, 1609, 1785
HpyCH4IV	ACGT	1 cut(s)	1649
HpyF10VI	GCNNNNNNNGC	7 cut(s)	611, 767, 842, 1166, 1175, 1313, 1391
HpyF3I	CTNAG	5 cut(s)	103, 285, 294, 829, 1761
HpySE526I	ACGT	1 cut(s)	1649
Hsp92II	CATG	9 cut(s)	122, 360, 542, 610, 665, 941, 1023, 1303, 1829
KroI	GCCGGC	1 cut(s)	614
KroNI	GCCGGC	1 cut(s)	616
Ksp22I	TGATCA	2 cut(s)	1152, 1500
Kzo9I	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
LguI	GCTCTTC	1 cut(s)	1289
LmnI	GCTCC	3 cut(s)	107, 1103, 1217
Lsp1109I	GCAGC	9 cut(s)	244, 327, 673, 757, 820, 832, 983, 1147, 1328
LweI	GCATC	6 cut(s)	832, 1156, 1165, 1171, 1193, 1338
MaeI	CTAG	8 cut(s)	237, 582, 1041, 1230, 1550, 1614, 1701, 1858
MaeII	ACGT	1 cut(s)	1649
MaeIII	GTNAC	5 cut(s)	854, 1027, 1603, 1609, 1624
MalI	GATC	8 cut(s)	144, 300, 667, 1053, 1154, 1227, 1502, 1639
MboI	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
MboII	GAAGA	8 cut(s)	281, 287, 310, 345, 424, 443, 1306, 1629
MfeI	CAATTG	2 cut(s)	1094, 1572
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	3 cut(s)	112, 1222, 1480
MlsI	TGGCCA	2 cut(s)	469, 790
MluNI	TGGCCA	2 cut(s)	469, 790
MlyI	GAGTC	2 cut(s)	395, 1349
MmeI	TCCRAC	2 cut(s)	1195, 1615
Mox20I	TGGCCA	2 cut(s)	469, 790
Mph1103I	ATGCAT	2 cut(s)	1186, 1792
MroNI	GCCGGC	1 cut(s)	614
MroXI	GAANNNNTTC	1 cut(s)	1739
MscI	TGGCCA	2 cut(s)	469, 790
MseI	TTAA	8 cut(s)	81, 246, 591, 945, 1007, 1433, 1695, 1767
MslI	CAYNNNNRTG	3 cut(s)	117, 246, 959
Msp20I	TGGCCA	2 cut(s)	469, 790
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	3 cut(s)	352, 615, 1427
MspR9I	CCNGG	6 cut(s)	352, 705, 996, 1427, 1428, 1644
MunI	CAATTG	2 cut(s)	1094, 1572
MvaI	CCWGG	3 cut(s)	705, 996, 1644
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	7 cut(s)	611, 767, 842, 1166, 1175, 1313, 1391
NaeI	GCCGGC	1 cut(s)	616
NciI	CCSGG	3 cut(s)	352, 1427, 1428
NcoI	CCATGG	1 cut(s)	1019
NdeII	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
NgoMIV	GCCGGC	1 cut(s)	614
NheI	GCTAGC	1 cut(s)	1040
NlaIII	CATG	9 cut(s)	122, 360, 542, 610, 665, 941, 1023, 1303, 1829
NlaIV	GGNNCC	6 cut(s)	300, 504, 736, 931, 1425, 1671
NmuCI	GTSAC	2 cut(s)	854, 1603
NruI	TCGCGA	1 cut(s)	648
NsiI	ATGCAT	2 cut(s)	1186, 1792
NspI	RCATGY	1 cut(s)	1303
PaeI	GCATGC	1 cut(s)	1303
PaeR7I	CTCGAG	1 cut(s)	1479
PciSI	GCTCTTC	1 cut(s)	1289
PdiI	GCCGGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	1739
PfeI	GAWTC	3 cut(s)	391, 473, 1834
PflFI	GACNNNGTC	1 cut(s)	860
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	9 cut(s)	259, 342, 688, 772, 835, 847, 973, 1162, 1318
PleI	GAGTC	2 cut(s)	395, 1349
PpsI	GAGTC	2 cut(s)	395, 1349
Ppu21I	YACGTR	1 cut(s)	1650
PpuMI	RGGWCCY	2 cut(s)	503, 930
PshBI	ATTAAT	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	1440
Psp124BI	GAGCTC	1 cut(s)	1222
Psp5II	RGGWCCY	2 cut(s)	503, 930
Psp6I	CCWGG	3 cut(s)	703, 994, 1642
PspFI	CCCAGC	2 cut(s)	499, 1567
PspGI	CCWGG	3 cut(s)	703, 994, 1642
PspN4I	GGNNCC	6 cut(s)	300, 504, 736, 931, 1425, 1671
PspPI	GGNCC	6 cut(s)	122, 503, 617, 930, 986, 1423
PspPPI	RGGWCCY	2 cut(s)	503, 930
PspXI	VCTCGAGB	1 cut(s)	1479
PstI	CTGCAG	1 cut(s)	1165
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	974
RruI	TCGCGA	1 cut(s)	648
RsaI	GTAC	3 cut(s)	101, 587, 1652
RsaNI	GTAC	3 cut(s)	100, 586, 1651
RseI	CAYNNNNRTG	3 cut(s)	117, 246, 959
SacI	GAGCTC	1 cut(s)	1222
SapI	GCTCTTC	1 cut(s)	1289
SaqAI	TTAA	8 cut(s)	81, 246, 591, 945, 1007, 1433, 1695, 1767
SatI	GCNGC	9 cut(s)	258, 341, 687, 771, 834, 846, 972, 1161, 1317
Sau3AI	GATC	8 cut(s)	142, 298, 665, 1051, 1152, 1225, 1500, 1637
Sau96I	GGNCC	6 cut(s)	122, 503, 617, 930, 986, 1423
SchI	GAGTC	2 cut(s)	395, 1349
ScrFI	CCNGG	6 cut(s)	352, 705, 996, 1427, 1428, 1644
SduI	GDGCHC	3 cut(s)	112, 1222, 1480
SfaNI	GCATC	6 cut(s)	832, 1156, 1165, 1171, 1193, 1338
SfcI	CTRYAG	1 cut(s)	1161
Sfr274I	CTCGAG	1 cut(s)	1479
SinI	GGWCC	5 cut(s)	122, 503, 930, 986, 1423
SlaI	CTCGAG	1 cut(s)	1479
SmaI	CCCGGG	1 cut(s)	1428
SmiMI	CAYNNNNRTG	3 cut(s)	117, 246, 959
SmlI	CTYRAG	3 cut(s)	190, 756, 1479
SmoI	CTYRAG	3 cut(s)	190, 756, 1479
SphI	GCATGC	1 cut(s)	1303
SsiI	CCGC	1 cut(s)	689
SspMI	CTAG	8 cut(s)	237, 582, 1041, 1230, 1550, 1614, 1701, 1858
SstI	GAGCTC	1 cut(s)	1222
StyD4I	CCNGG	6 cut(s)	350, 703, 994, 1425, 1426, 1642
StyI	CCWWGG	3 cut(s)	741, 1019, 1229
TaaI	ACNGT	6 cut(s)	643, 860, 1003, 1033, 1609, 1785
TaiI	ACGT	1 cut(s)	1652
TaqI	TCGA	7 cut(s)	147, 816, 864, 1054, 1224, 1480, 1780
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	3 cut(s)	391, 473, 1834
Tru1I	TTAA	8 cut(s)	81, 246, 591, 945, 1007, 1433, 1695, 1767
Tru9I	TTAA	8 cut(s)	81, 246, 591, 945, 1007, 1433, 1695, 1767
TscAI	CASTG	4 cut(s)	646, 1162, 1195, 1851
TseFI	GTSAC	2 cut(s)	854, 1603
TseI	GCWGC	9 cut(s)	257, 340, 686, 770, 833, 845, 971, 1160, 1316
Tsp45I	GTSAC	2 cut(s)	854, 1603
TspDTI	ATGAA	5 cut(s)	507, 545, 1296, 1356, 1506
TspMI	CCCGGG	1 cut(s)	1426
TspRI	CASTG	4 cut(s)	646, 1162, 1195, 1851
Tth111I	GACNNNGTC	1 cut(s)	860
VpaK11BI	GGWCC	5 cut(s)	122, 503, 930, 986, 1423
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	5 cut(s)	160, 361, 1203, 1465, 1712
XceI	RCATGY	1 cut(s)	1303
XhoI	CTCGAG	1 cut(s)	1479
XmaI	CCCGGG	1 cut(s)	1426
XmaJI	CCTAGG	1 cut(s)	1229
XmnI	GAANNNNTTC	1 cut(s)	1739
XspI	CTAG	8 cut(s)	237, 582, 1041, 1230, 1550, 1614, 1701, 1858
Zsp2I	ATGCAT	2 cut(s)	1186, 1792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.