pycom03g03030

subtilisin-like protease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
2382493 .. 2382920
428 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g03030.1

Sequence Viewer

Length: 324 bp
ATGCTAATATGGTTGGATTTTTTCTTCTGTTCCAATTTCTTCAACAGCAATGAAAGGGCACAAGAAGCAATATTTTATTCATATACGAGAAATATCAATGGCTTTGCTGCAATTTTGGATGATGAAGAGGCTGCTCAGATTGCAAATGATCCAAATGTTGTGTCTGTCTTTCCAAACAGAGGAAGAAAGCTACACACAACTCGTTCATGGGATTTTCTTGGATTGGAAGAAAACGGTGAAACCCGGCCCGGTTCAATTTTGAAGAAGGCACGGTTTGGTGCAAATACGATTATAGGAAACCTTGATACTGGTAATCGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.15

Weight (kDa)

5.3

Isoelectric Point (pI)

24.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 18 - 65 1.3e-13 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 3 cut(s) 43, 255, 262
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 107, 131
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 2 cut(s) 244, 249
AsuHPI GGTGA 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 94, 118
BcnI CCSGG 2 cut(s) 244, 249
BisI GCNGC 2 cut(s) 108, 132
BlsI GCNGC 2 cut(s) 109, 133
Bme1390I CCNGG 2 cut(s) 244, 249
BmgT120I GGNCC 1 cut(s) 246
BmrFI CCNGG 2 cut(s) 244, 249
BpuMI CCSGG 2 cut(s) 244, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 55
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 2 cut(s) 94, 118
BshFI GGCC 1 cut(s) 247
BsiSI CCGG 2 cut(s) 244, 249
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 313
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 236, 273
Bst6I CTCTTC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 65, 140
BstSCI CCNGG 2 cut(s) 242, 247
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 94, 118
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 246
CviAII CATG 1 cut(s) 207
CviJI RGCY 4 cut(s) 102, 131, 190, 247
CviKI_1 RGCY 4 cut(s) 102, 131, 190, 247
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
FaeI CATG 1 cut(s) 210
FaiI YATR 5 cut(s) 10, 82, 84, 208, 293
FatI CATG 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 108, 132
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 108, 132
GluI GCNGC 2 cut(s) 108, 132
HaeIII GGCC 1 cut(s) 247
HapII CCGG 2 cut(s) 244, 249
Hin1II CATG 1 cut(s) 210
HpaII CCGG 2 cut(s) 244, 249
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 236, 273
HpyCH4V TGCA 3 cut(s) 110, 143, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 140
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 210
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 257, 262, 294
Lsp1109I GCAGC 2 cut(s) 94, 118
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 6 cut(s) 16, 31, 137, 195, 239, 274
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 4 cut(s) 34, 111, 255, 319
MnlI CCTC 2 cut(s) 121, 173
MspI CCGG 2 cut(s) 244, 249
MspR9I CCNGG 2 cut(s) 244, 249
MwoI GCNNNNNNNGC 2 cut(s) 65, 140
NciI CCSGG 2 cut(s) 244, 249
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 210
PkrI GCNGC 2 cut(s) 109, 133
PspPI GGNCC 1 cut(s) 246
SatI GCNGC 2 cut(s) 108, 132
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 244, 249
SduI GDGCHC 1 cut(s) 61
SetI ASST 2 cut(s) 192, 303
Sse9I AATT 4 cut(s) 34, 111, 255, 319
SspI AATATT 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 242, 247
TaaI ACNGT 2 cut(s) 236, 273
TasI AATT 4 cut(s) 34, 111, 255, 319
TseI GCWGC 2 cut(s) 107, 131
TspDTI ATGAA 4 cut(s) 66, 69, 138, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.