Prupe.1G092800_v2.0.a1

transposon protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
7048623 .. 7051219
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G092800.1

Sequence Viewer

Length: 312 bp
ATGGGGTTAATTCATTCATTGATGTTGCAAGACACCATGCATGCCAATAGCATGAATGAGACATTATGTCCATGCAAGAATTGCCAAAATTTATTTTGGCACTCTTTGGAGGTGGTTAATTATGTTCATCTGTTGAAGTTTGGGATGTCAGTGACTTATGATATATGGGTGTATCATGGAGAATATATGACTGGTCGTGGTTTGATTCCCCCAGTTCAGGTGCGTACTAATGAAGTGAATAGCAACTTGTCTAATATGTTTGATGATGTTTTTCATAGAACGGATGGTGATAAAGAACTGATGGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.98

Weight (kDa)

5.31

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 136
AhdI GACNNNNNGTC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 299
BccI CCATC 2 cut(s) 278, 295
BcoDI GTCTC 1 cut(s) 53
BmeRI GACNNNNNGTC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 2 cut(s) 196, 212
BseGI GGATG 2 cut(s) 150, 289
BseLI CCNNNNNNNGG 1 cut(s) 217
BseNI ACTGG 2 cut(s) 196, 212
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 196, 212
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 2 cut(s) 150, 289
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 44
BtsCI GGATG 2 cut(s) 150, 289
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 225
CviAII CATG 5 cut(s) 37, 41, 52, 72, 176
CviQI GTAC 1 cut(s) 225
DriI GACNNNNNGTC 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 42
FaeI CATG 5 cut(s) 40, 44, 55, 75, 179
FatI CATG 5 cut(s) 36, 40, 51, 71, 175
FokI GGATG 2 cut(s) 157, 296
Hin1II CATG 5 cut(s) 40, 44, 55, 75, 179
HinfI GANTC 1 cut(s) 205
HphI GGTGA 1 cut(s) 299
HpyCH4V TGCA 3 cut(s) 28, 40, 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
Hsp92II CATG 5 cut(s) 40, 44, 55, 75, 179
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 3 cut(s) 177, 203, 225
MaeIII GTNAC 1 cut(s) 151
MluCI AATT 4 cut(s) 9, 79, 88, 118
MnlI CCTC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 42
MseI TTAA 2 cut(s) 8, 117
MwoI GCNNNNNNNGC 1 cut(s) 81
NlaIII CATG 5 cut(s) 40, 44, 55, 75, 179
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 42
NspI RCATGY 1 cut(s) 44
PaeI GCATGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 205
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 8, 117
SetI ASST 2 cut(s) 114, 222
SphI GCATGC 1 cut(s) 44
Sse9I AATT 4 cut(s) 9, 79, 88, 118
TasI AATT 4 cut(s) 9, 79, 88, 118
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 8, 117
Tru9I TTAA 2 cut(s) 8, 117
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 5 cut(s) 6, 68, 116, 246, 263
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 156
XapI RAATTY 1 cut(s) 88
XceI RCATGY 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.