Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Forward (+)

3556413 .. 3557564

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTGCGATTGTCAAAACCAAATGCGGATGCACCCTATGTACTCCAGTCAAGTGTACTTCACATTAGTTGGCTTTTGGAGGCATGTTCAGCTGATGAGGAGATTTCCAATCCCCTTCCTGATAGGATATGGAAAGATCTAAGCTTAGCTCACAGGCAGCGTGAAGGAAAGAGAAGGTGGTCTGATGGGATTCATCAGCCTGTGGAGGCTACAGAATGTTTGAAGATTCAGGACAAAAGTTTATTGGAAATGTTGGATACACCATTCATTGAAGTGCCAACATATGTGGCAAACATTCTCAATGTTTTTCCTATTCAAAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

108

Amino Acids

12.39

Weight (kDa)

5.54

Isoelectric Point (pI)

72.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	42, 57
AgsI	TTSAA	3 cut(s)	223, 272, 317
AluBI	AGCT	4 cut(s)	92, 144, 149, 322
AluI	AGCT	4 cut(s)	92, 144, 149, 322
ApeKI	GCWGC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	159
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	136
Bsp1720I	GCTNAGC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	140, 145
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	41, 56
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	1 cut(s)	84
CviJI	RGCY	7 cut(s)	73, 92, 144, 149, 199, 209, 322
CviKI_1	RGCY	7 cut(s)	73, 92, 144, 149, 199, 209, 322
CviQI	GTAC	2 cut(s)	41, 56
DdeI	CTNAG	2 cut(s)	140, 145
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
FaeI	CATG	1 cut(s)	87
FaiI	YATR	5 cut(s)	39, 85, 130, 283, 285
FatI	CATG	1 cut(s)	83
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	87
HindIII	AAGCTT	2 cut(s)	142, 320
HinfI	GANTC	2 cut(s)	190, 226
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	119, 230
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	125, 158, 168
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	140, 145
Hsp92II	CATG	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	59, 132, 139, 213, 215
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	19
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	235
MflI	RGATCY	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	3 cut(s)	73, 91, 199
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	87
NspI	RCATGY	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	190, 226
PkrI	GCNGC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	42, 57
RsaNI	GTAC	2 cut(s)	41, 56
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	136
SetI	ASST	5 cut(s)	94, 146, 151, 179, 324
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	210
SgeI	CNNG	8 cut(s)	58, 63, 96, 131, 166, 173, 212, 242
SmiMI	CAYNNNNRTG	1 cut(s)	272
SsiI	CCGC	1 cut(s)	26
TatI	WGTACW	2 cut(s)	40, 55
TfiI	GAWTC	2 cut(s)	190, 226
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	182, 256
XceI	RCATGY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.