Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

39296092 .. 39296606

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGAGTTTACAGGACGAGTTATGCAGGCGGTGGAGTGATGGACTTCACCAAGCAGTTGAAGCAAAAGAAGGTCTGCCGATTCAAAACGAAACTGTAACTATGGCATCTATTAGCTACCAAAACTTCTTTCTCCAGGTAGGATTCTATCTCTCACCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

53

Amino Acids

6.09

Weight (kDa)

4.97

Isoelectric Point (pI)

68.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecA_DEAD	PF07517	11 - 44	3e-06	SecA DEAD-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	59, 83
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	38, 144
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	134
BspACI	CCGC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	26
CviJI	RGCY	1 cut(s)	114
CviKI_1	RGCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	132
FaiI	YATR	2 cut(s)	22, 101
GsuI	CTGGAG	1 cut(s)	116
HinfI	GANTC	2 cut(s)	79, 141
HphI	GGTGA	2 cut(s)	38, 144
Hpy166II	GTNNAC	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	10, 119, 146
LweI	GCATC	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	79, 141
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	4 cut(s)	73, 116, 138, 157
SfaNI	GCATC	1 cut(s)	113
SgeI	CNNG	6 cut(s)	23, 28, 37, 62, 145, 146
SsiI	CCGC	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	79, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.