Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

7883452 .. 7886673

Gene Structure 3222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29246

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTTCGTTCTCTTCCTGAAAATTCTCCGATTCGTTTTTCGTTTCCGTCTTCAGGTGTCTGTCATTCAGTCATGCTCCCAAAGTACCAATAAGGTGTTACATGCTTTGCAACAGAACTTCCCAGCAGCGTCAAAAACTCAGTTAAGGAATAAAGTGCGAGAGATATTAGATTTTGTGGATACCCATTGGCAGATCTACTGGAGTAACGTGATAACAGAGCACAGCCAAGCCATTTTGAACTCTTTGTACTCATTTTACTGGAACTTGACTAGAAATTGGGAGCTGAGAACTGGATTAATCAATGTCGGATGCTCTGGGAATTCTCAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

110

Amino Acids

13.01

Weight (kDa)

10.13

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cac1_C	PF21796	19 - 65	4.4e-15	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	328
AcsI	RAATTY	2 cut(s)	21, 319
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	85, 248
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	21, 319
AseI	ATTAAT	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	3 cut(s)	203, 263, 295
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	152, 275
BseNI	ACTGG	3 cut(s)	203, 263, 295
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	151, 276
BsrI	ACTGG	3 cut(s)	203, 263, 295
BssMI	GATC	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	138, 284
BstF5I	GGATG	1 cut(s)	314
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	314
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	84, 247
CviAII	CATG	2 cut(s)	72, 101
CviJI	RGCY	3 cut(s)	225, 230, 283
CviKI_1	RGCY	3 cut(s)	225, 230, 283
CviQI	GTAC	2 cut(s)	84, 247
DdeI	CTNAG	2 cut(s)	138, 284
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	319
FaeI	CATG	2 cut(s)	75, 104
FaiI	YATR	2 cut(s)	73, 102
FatI	CATG	2 cut(s)	71, 100
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	75, 104
HinfI	GANTC	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	29, 308
Hpy188III	TCNNGA	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	207, 328
HpyCH4V	TGCA	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	138, 284
HpySE526I	ACGT	2 cut(s)	207, 328
Hsp92II	CATG	2 cut(s)	75, 104
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	80, 280
LpnPI	CCDG	7 cut(s)	29, 38, 135, 184, 244, 276, 300
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	207, 328
MaeIII	GTNAC	2 cut(s)	96, 203
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	4, 41
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	21, 274, 319
MmeI	TCCRAC	1 cut(s)	286
MseI	TTAA	2 cut(s)	143, 296
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	2 cut(s)	75, 104
NspI	RCATGY	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	2 cut(s)	85, 248
RsaNI	GTAC	2 cut(s)	84, 247
SaqAI	TTAA	2 cut(s)	143, 296
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	57, 96, 210, 285, 331
SfaNI	GCATC	1 cut(s)	299
Sse9I	AATT	3 cut(s)	21, 274, 319
SspMI	CTAG	1 cut(s)	270
TaiI	ACGT	2 cut(s)	210, 331
TasI	AATT	3 cut(s)	21, 274, 319
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	143, 296
Tru9I	TTAA	2 cut(s)	143, 296
TseI	GCWGC	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	296
XapI	RAATTY	2 cut(s)	21, 319
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.