Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

78452335 .. 78454325

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG608900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCAAACTCCGTTAATCCCTTACTTCCATCACAAGCCAAGGAAAGACATATTTTTGGCATCTGTAGCAGAGCTGCTCAACATGCAGCTGATGAGCGTGAAGGAAAGAGAAGGTGGTCTGATGGGATTCATCAGCCTGTGGAGGCTAAAGAATGTTTGAAGATTCAGAGGTCAGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.75

Weight (kDa)

9.3

Isoelectric Point (pI)

77.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	2 cut(s)	74, 89
AluI	AGCT	2 cut(s)	74, 89
ApeKI	GCWGC	2 cut(s)	74, 86
BbvI	GCAGC	2 cut(s)	61, 98
BccI	CCATC	2 cut(s)	37, 116
BfmI	CTRYAG	1 cut(s)	64
BisI	GCNGC	2 cut(s)	75, 87
BlsI	GCNGC	2 cut(s)	76, 88
BmsI	GCATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	61, 98
BsrDI	GCAATG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 83
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	61, 98
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	38, 74, 89, 136, 146
CviKI_1	RGCY	5 cut(s)	38, 74, 89, 136, 146
Eco130I	CCWWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	86
FaiI	YATR	2 cut(s)	51, 84
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	75, 87
Fsp4HI	GCNGC	2 cut(s)	75, 87
GluI	GCNGC	2 cut(s)	75, 87
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	2 cut(s)	127, 163
Hpy188I	TCNGA	2 cut(s)	121, 168
HpyAV	CCTTC	2 cut(s)	95, 105
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 83
Hsp92II	CATG	1 cut(s)	86
LpnPI	CCDG	1 cut(s)	150
Lsp1109I	GCAGC	2 cut(s)	61, 98
LweI	GCATC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	172
MnlI	CCTC	2 cut(s)	136, 162
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	66, 83
NlaIII	CATG	1 cut(s)	86
NspI	RCATGY	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	127, 163
PkrI	GCNGC	2 cut(s)	76, 88
PvuII	CAGCTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	75, 87
SetI	ASST	4 cut(s)	76, 91, 116, 173
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	64
SgeI	CNNG	5 cut(s)	47, 52, 95, 110, 149
StyI	CCWWGG	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	127, 163
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseI	GCWGC	2 cut(s)	74, 86
TspDTI	ATGAA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.