Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

3994876 .. 3996235

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGATAGAAAGTGGATCAAAAATCCGAACAAGTTGAGTGATGAGTACAAGCGCGGTGTTGAGTCATTTCTTGAAGTTGCAAGGAAGCATGTGAATGTTAGAGGCAGAACTAAATGTCCTTGCATCAAGTGCCTAAACCATGATCGTCAAACTATACCAGTTGTGAAGATACATTTGAGGAACTATGGGATATCTACAAGTTATGACATTTGGACATCTCATGGAGAAACAATAGGACAGCAATCACATAATTTTTCTCCCCCAATGGTTGAAGAGATTGCTGGAGCCAATGATGTTATCCATGATATTTTGAATGATGCATTCCCACCCATTGACATGGATCACATGGGTCAAGATCTAGAGGAGGATGTGCTACAAGGAGGCAATGGAGATGTTATGGATGATCATGGGTCTCGTGGGATGAGGGTTGATGCTGATCAGTATGAGAAATTATTGGCTGAAGTCGAAAGAGAGTTTTTTCCCCGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transposase_21

Protein Analysis

163

Amino Acids

18.69

Weight (kDa)

5.43

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	3 - 76	2.2e-19	Transposase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	23, 348
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	74, 272, 313
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	23, 348
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	484
BauI	CACGAG	1 cut(s)	414
BclI	TGATCA	2 cut(s)	403, 436
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	3 cut(s)	132, 307, 421
BpmI	CTGGAG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	3 cut(s)	373, 406, 426
BseJI	GATNNNNATC	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	417
Bsp143I	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
BspACI	CCGC	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	23, 348
BspTNI	GGTCTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	373, 406, 426
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	6 cut(s)	18, 145, 343, 358, 406, 439
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	482
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	373, 406, 426
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	7 cut(s)	89, 140, 221, 302, 337, 346, 407
CviJI	RGCY	2 cut(s)	287, 458
CviKI_1	RGCY	2 cut(s)	287, 458
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	6 cut(s)	17, 144, 342, 357, 405, 438
DpnII	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	7 cut(s)	92, 143, 224, 305, 340, 349, 410
FatI	CATG	7 cut(s)	88, 139, 220, 301, 336, 345, 406
FbaI	TGATCA	2 cut(s)	403, 436
FokI	GGATG	3 cut(s)	380, 413, 433
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	303
HapII	CCGG	1 cut(s)	484
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	7 cut(s)	92, 143, 224, 305, 340, 349, 410
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	484
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	71, 353, 359
HpyCH4V	TGCA	3 cut(s)	80, 123, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
Hsp92II	CATG	7 cut(s)	92, 143, 224, 305, 340, 349, 410
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	2 cut(s)	403, 436
Kzo9I	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	2 cut(s)	171, 267
LweI	GCATC	3 cut(s)	132, 307, 421
MaeI	CTAG	1 cut(s)	359
MalI	GATC	6 cut(s)	17, 144, 342, 357, 405, 438
MboI	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
MboII	GAAGA	2 cut(s)	178, 284
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	2 cut(s)	250, 449
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	6 cut(s)	95, 171, 355, 358, 374, 417
Mph1103I	ATGCAT	1 cut(s)	322
MslI	CAYNNNNRTG	2 cut(s)	93, 335
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	1 cut(s)	484
Mva1269I	GAATGC	1 cut(s)	320
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
NlaIII	CATG	7 cut(s)	92, 143, 224, 305, 340, 349, 410
NlaIV	GGNNCC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	92
PctI	GAATGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	93, 335
Sau3AI	GATC	6 cut(s)	15, 142, 340, 355, 403, 436
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	484
SfaNI	GCATC	3 cut(s)	132, 307, 421
SmiMI	CAYNNNNRTG	2 cut(s)	93, 335
Sse9I	AATT	2 cut(s)	250, 449
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	482
TaqI	TCGA	1 cut(s)	465
TasI	AATT	2 cut(s)	250, 449
TatI	WGTACW	1 cut(s)	45
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.