Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

5991846 .. 5996649

Gene Structure 4804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAGAAACATTTGAACATAATTCAAAATGATCAAATTGAATTGGAAACAAACCTCACAGACGCAATTGACAAGTCATCCCACAAGCAGGCTAATTTTGGCTTAGATAGTATGGGGCTGAGTCACTCCGCTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGAAGTTCCCAGCCGCGTCAAAGACTCAGTTAAGGAATAAAGTGCGAGAGATGTCAGATTTTGTGGATACCCATTGGCAGATCTGCTGGAGTAACGTGATAACAGAGCACAGCCAAGCCATTTTGAACTCTTTGTACTCATTTTACTGGAACTTGACAAGAAATTGGGAGTTGAGGTATGTGAATCTTTTTCATTACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

122

Amino Acids

14.32

Weight (kDa)

9.1

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cac1_C	PF21796	56 - 83	2.8e-08	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	182
AciI	CCGC	2 cut(s)	129, 180
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	16, 26, 41, 292
Alw21I	GWGCWC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	110, 206
BseNI	ACTGG	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	31, 246
BspACI	CCGC	2 cut(s)	129, 180
BspCNI	CTCAG	2 cut(s)	111, 205
BspFNI	CGCG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	31, 246
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	103, 119, 192
BstF5I	GGATG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	2 cut(s)	34, 249
BstMBI	GATC	2 cut(s)	31, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstUI	CGCG	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	90
CseI	GACGC	2 cut(s)	71, 171
Csp6I	GTAC	1 cut(s)	301
CviJI	RGCY	6 cut(s)	92, 102, 118, 179, 279, 284
CviKI_1	RGCY	6 cut(s)	92, 102, 118, 179, 279, 284
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	103, 119, 192
DpnI	GATC	2 cut(s)	33, 248
DpnII	GATC	2 cut(s)	31, 246
FaiI	YATR	5 cut(s)	20, 113, 345, 365, 367
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	274
HgaI	GACGC	2 cut(s)	71, 171
HinfI	GANTC	4 cut(s)	121, 163, 190, 349
Hpy188I	TCNGA	2 cut(s)	168, 223
HpyCH4IV	ACGT	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	3 cut(s)	103, 119, 192
HpySE526I	ACGT	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 246
LpnPI	CCDG	6 cut(s)	74, 117, 126, 189, 238, 298
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	122, 257
MalI	GATC	2 cut(s)	33, 248
MboI	GATC	2 cut(s)	31, 246
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	2 cut(s)	66, 150
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	7 cut(s)	21, 36, 41, 66, 94, 150, 328
MlyI	GAGTC	2 cut(s)	130, 184
MnlI	CCTC	2 cut(s)	65, 333
MseI	TTAA	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	131
MunI	CAATTG	2 cut(s)	66, 150
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	31, 246
NmuCI	GTSAC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	163, 349
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	2 cut(s)	129, 184
PpsI	GAGTC	2 cut(s)	129, 184
PspFI	CCCAGC	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	284, 316
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	31, 246
SchI	GAGTC	2 cut(s)	130, 184
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	3 cut(s)	57, 264, 344
Sse9I	AATT	7 cut(s)	21, 36, 41, 66, 94, 150, 328
SsiI	CCGC	2 cut(s)	129, 180
TaiI	ACGT	1 cut(s)	264
TasI	AATT	7 cut(s)	21, 36, 41, 66, 94, 150, 328
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	163, 349
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	17, 347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.