Rh2DG657000

Protein translocase subunit secA

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
88164379 .. 88165649
1271 bp
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UTR
Exon/CDS
Intron
Rh2DG657000.1

Sequence Viewer

Length: 261 bp
ATGTTGCGATTGTCAAAACCATATGCGGATGCACCCTATGTACTCCAGTCAAGTGTACTTCACATTAGTTGGCTTTTGGAGGCATGTTCAGCTGTAGCAGAGTTGCTCGACATGCAGCTGATGAGGCAGAGTGAAGGAAAGAGAAGGTGGTCTGATGGGATTCATCAGCCTGTGGAGGCTAAAGAATGTTTGAAGATTCAGACTCTATTCAAAGCTATGGGGATGACCGAGACCGCAAAGACTGAAAGGTCAGCAATGTAA

Protein Analysis

86

Amino Acids

9.76

Weight (kDa)

7.8

Isoelectric Point (pI)

79.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AciI CCGC 2 cut(s) 26, 234
AfaI GTAC 2 cut(s) 42, 57
AgsI TTSAA 2 cut(s) 193, 211
AluBI AGCT 3 cut(s) 92, 118, 215
AluI AGCT 3 cut(s) 92, 118, 215
Alw26I GTCTC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmsI GCATC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 261
BseGI GGATG 2 cut(s) 34, 228
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 224
BspACI CCGC 2 cut(s) 26, 234
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 34, 228
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 3 cut(s) 89, 112, 124
BstNSI RCATGY 2 cut(s) 87, 115
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 127
BtsCI GGATG 2 cut(s) 34, 228
Csp6I GTAC 2 cut(s) 41, 56
CviAII CATG 2 cut(s) 84, 112
CviJI RGCY 6 cut(s) 73, 92, 118, 169, 179, 215
CviKI_1 RGCY 6 cut(s) 73, 92, 118, 169, 179, 215
CviQI GTAC 2 cut(s) 41, 56
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 87, 115
FaiI YATR 6 cut(s) 22, 24, 39, 85, 113, 218
FatI CATG 2 cut(s) 83, 111
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 2 cut(s) 41, 235
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 29
Hin1II CATG 2 cut(s) 87, 115
HinfI GANTC 3 cut(s) 160, 196, 202
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 154, 201
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 128, 138
HpyCH4V TGCA 2 cut(s) 32, 115
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 112, 124
Hsp92II CATG 2 cut(s) 87, 115
LpnPI CCDG 2 cut(s) 59, 183
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 205
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 3 cut(s) 73, 117, 169
MspA1I CMGCKG 2 cut(s) 92, 118
MwoI GCNNNNNNNGC 3 cut(s) 89, 112, 124
NdeI CATATG 1 cut(s) 22
NlaIII CATG 2 cut(s) 87, 115
NspI RCATGY 2 cut(s) 87, 115
PfeI GAWTC 2 cut(s) 160, 196
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PvuII CAGCTG 2 cut(s) 92, 118
RsaI GTAC 2 cut(s) 42, 57
RsaNI GTAC 2 cut(s) 41, 56
SatI GCNGC 1 cut(s) 116
SchI GAGTC 1 cut(s) 196
SetI ASST 5 cut(s) 94, 120, 149, 217, 251
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 93
SgeI CNNG 7 cut(s) 58, 63, 96, 119, 124, 182, 241
SsiI CCGC 2 cut(s) 26, 234
TaqI TCGA 1 cut(s) 108
TaqII GACCGA 1 cut(s) 242
TatI WGTACW 2 cut(s) 40, 55
TfiI GAWTC 2 cut(s) 160, 196
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 152
XceI RCATGY 2 cut(s) 87, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.