Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

78443940 .. 78451573

Gene Structure 7634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG608800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAAACCTATCTCCAGATCACGTTTTGTCTCATGAAGCAGACCCTCTGTTGGTATGATCACCCGACGGAGTTTACTTCCGAAACCTCCCCAGCTGGACAAAGAGGCTGGGGGCATCGAAACATAAATGAAGTTGACTATCATGGTACCTATATCCCCTGGGGTCAGCAAAATGATGTTGGTACCAGTACCACTATCACTGATGAGCTTTCATCGGAAGTTGATATGCTTACATTGGAGTCCTTTCAAACTCAGTGGGTCAGATTGTCAAAACCATATGCGGATGCACCCTATGTACTCCAGTCAAGTGTACTTCACATTAGTTGGCTTTTGGAGGCATGTTCAGCTGTAGCAGAGTTGCTCGACATGCAGCTGATGAGCTCACAGGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.94

Weight (kDa)

4.4

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	146, 182
AccB1I	GGYRCC	2 cut(s)	146, 182
AciI	CCGC	1 cut(s)	281
AfaI	GTAC	5 cut(s)	148, 184, 190, 297, 312
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	5 cut(s)	95, 208, 347, 373, 381
AluI	AGCT	5 cut(s)	95, 208, 347, 373, 381
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	370
Asp718I	GGTACC	2 cut(s)	146, 182
AsuHPI	GGTGA	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	146, 182
BanII	GRGCYC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	160
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	148, 184
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	124, 274
BpmI	CTGGAG	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	158, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	186, 301
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	158, 159
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	2 cut(s)	186, 301
BseXI	GCAGC	1 cut(s)	382
BseYI	CCCAGC	2 cut(s)	91, 108
BshNI	GGYRCC	2 cut(s)	146, 182
BsiHKAI	GWGCWC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	18, 58
BspACI	CCGC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	148, 184
BspT107I	GGYRCC	2 cut(s)	146, 182
BsrI	ACTGG	2 cut(s)	186, 301
BssECI	CCNNGG	2 cut(s)	158, 159
BssMI	GATC	2 cut(s)	18, 58
Bst2UI	CCWGG	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	21, 61
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	18, 58
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 367
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	2 cut(s)	342, 370
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	198, 260
CciI	TCATGA	1 cut(s)	33
Csp6I	GTAC	5 cut(s)	147, 183, 189, 296, 311
CspCI	CAANNNNNGTGG	2 cut(s)	236, 271
CviAII	CATG	4 cut(s)	34, 143, 339, 367
CviJI	RGCY	7 cut(s)	95, 108, 208, 328, 347, 373, 381
CviKI_1	RGCY	7 cut(s)	95, 108, 208, 328, 347, 373, 381
CviQI	GTAC	5 cut(s)	147, 183, 189, 296, 311
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	20, 60
DpnII	GATC	2 cut(s)	18, 58
Ecl136II	GAGCTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	4 cut(s)	37, 146, 342, 370
FatI	CATG	4 cut(s)	33, 142, 338, 366
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	1 cut(s)	371
GluI	GCNGC	1 cut(s)	371
GsaI	CCCAGC	2 cut(s)	95, 112
GsuI	CTGGAG	1 cut(s)	284
Hin1II	CATG	4 cut(s)	37, 146, 342, 370
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	75, 136, 311
Hpy188I	TCNGA	3 cut(s)	82, 217, 263
Hpy188III	TCNNGA	2 cut(s)	16, 34
Hpy8I	GTNNAC	3 cut(s)	75, 136, 311
Hpy99I	CGWCG	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	287, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 367
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	37, 146, 342, 370
KpnI	GGTACC	2 cut(s)	150, 186
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	18, 58
LpnPI	CCDG	9 cut(s)	29, 81, 94, 105, 145, 172, 199, 314, 371
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	124, 274
MaeII	ACGT	1 cut(s)	23
MalI	GATC	2 cut(s)	20, 60
MboI	GATC	2 cut(s)	18, 58
MhlI	GDGCHC	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	4 cut(s)	56, 97, 98, 328
MspA1I	CMGCKG	3 cut(s)	95, 347, 373
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	344, 367
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	18, 58
NlaIII	CATG	4 cut(s)	37, 146, 342, 370
NlaIV	GGNNCC	2 cut(s)	148, 184
NspI	RCATGY	2 cut(s)	342, 370
PagI	TCATGA	1 cut(s)	33
PasI	CCCWGGG	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	158
PspFI	CCCAGC	2 cut(s)	91, 108
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	148, 184
PvuII	CAGCTG	3 cut(s)	95, 347, 373
RsaI	GTAC	5 cut(s)	148, 184, 190, 297, 312
RsaNI	GTAC	5 cut(s)	147, 183, 189, 296, 311
SacI	GAGCTC	1 cut(s)	383
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	2 cut(s)	18, 58
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	9 cut(s)	11, 26, 89, 97, 152, 210, 349, 375, 383
SfaNI	GCATC	2 cut(s)	124, 274
SfcI	CTRYAG	1 cut(s)	348
SsiI	CCGC	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	158
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	118, 363
TatI	WGTACW	2 cut(s)	295, 310
TscAI	CASTG	2 cut(s)	205, 260
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	3 cut(s)	50, 144, 201
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	205, 260
XceI	RCATGY	2 cut(s)	342, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.