Rh1AG212100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
40573819 .. 40582670
8852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG212100.1

Sequence Viewer

Length: 366 bp
ATGTTCATTTGCTTTTCCATTCTAGGCATGCTGCAGATTCCGGAACGAACTTCCAGATCCAAGTGCACAACCCAAGCTCATGTCCATGAAGAAAGACAAAGATCAATCTGCTGGAGTAACTTGATAACAGAGCACAGCCAAGCCATTTTGAACTCTTTGTACTCTTTTTACTGGAACTTGACTAGAAATTGGGAGTTGTGGGGATCCAAAATGAATAGAGAGTGGATTCATTCTAAAAACAAACTCAACCAAGAATACAATTATGGTATTCAGTCTTTCATTGGATTAAGGGAGACTTTGCTTTCTTATCTTATCAAAATCACAACTGCTTATTGTCTCTGGATCGATATGTGGCTAGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.5

Weight (kDa)

8.75

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 40
AclWI GGATC 4 cut(s) 51, 198, 211, 350
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 2 cut(s) 68, 135
Alw26I GTCTC 2 cut(s) 287, 341
Alw44I GTGCAC 1 cut(s) 64
AlwI GGATC 4 cut(s) 51, 198, 211, 350
Aor13HI TCCGGA 1 cut(s) 40
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 68
BamHI GGATCC 1 cut(s) 203
Bbv12I GWGCWC 2 cut(s) 68, 135
BbvI GCAGC 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 287, 341
BfaI CTAG 3 cut(s) 23, 183, 356
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 345
BseNI ACTGG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 18
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 68, 135
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 287, 341
Bsp1286I GDGCHC 2 cut(s) 68, 135
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 4 cut(s) 56, 101, 203, 342
BspDI ATCGAT 1 cut(s) 345
BspEI TCCGGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 4 cut(s) 51, 198, 211, 350
BsrI ACTGG 1 cut(s) 176
BssMI GATC 4 cut(s) 56, 101, 203, 342
BstC8I GCNNGC 1 cut(s) 29
BstKTI GATC 4 cut(s) 59, 104, 206, 345
BstMAI GTCTC 2 cut(s) 287, 341
BstMBI GATC 4 cut(s) 56, 101, 203, 342
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 56, 203
BstYI RGATCY 2 cut(s) 56, 203
Bsu15I ATCGAT 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 29
ClaI ATCGAT 1 cut(s) 345
Csp6I GTAC 1 cut(s) 160
CviAII CATG 4 cut(s) 28, 80, 86, 363
CviJI RGCY 4 cut(s) 77, 138, 143, 355
CviKI_1 RGCY 4 cut(s) 77, 138, 143, 355
CviQI GTAC 1 cut(s) 160
DpnI GATC 4 cut(s) 58, 103, 205, 344
DpnII GATC 4 cut(s) 56, 101, 203, 342
FaeI CATG 4 cut(s) 31, 83, 89, 366
FaiI YATR 6 cut(s) 29, 81, 87, 264, 350, 364
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 4 cut(s) 27, 79, 85, 362
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 3 cut(s) 23, 183, 356
GluI GCNGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 133
HapII CCGG 1 cut(s) 41
Hin1II CATG 4 cut(s) 31, 83, 89, 366
HinfI GANTC 2 cut(s) 37, 226
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 66
Hpy188III TCNNGA 3 cut(s) 41, 54, 340
Hpy8I GTNNAC 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 34, 66
Hsp92II CATG 4 cut(s) 31, 83, 89, 366
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 4 cut(s) 56, 101, 203, 342
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 5 cut(s) 54, 67, 97, 157, 325
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 3 cut(s) 23, 183, 356
MaeIII GTNAC 1 cut(s) 116
MalI GATC 4 cut(s) 58, 103, 205, 344
MboI GATC 4 cut(s) 56, 101, 203, 342
MboII GAAGA 1 cut(s) 101
MflI RGATCY 2 cut(s) 56, 203
MhlI GDGCHC 2 cut(s) 68, 135
MluCI AATT 2 cut(s) 187, 259
MroI TCCGGA 1 cut(s) 40
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 41
NdeII GATC 4 cut(s) 56, 101, 203, 342
NlaIII CATG 4 cut(s) 31, 83, 89, 366
NlaIV GGNNCC 1 cut(s) 205
NspI RCATGY 1 cut(s) 31
PaeI GCATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 37, 226
PkrI GCNGC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 205
PsrI GAACNNNNNNTAC 2 cut(s) 143, 175
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 56, 203
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 4 cut(s) 56, 101, 203, 342
SduI GDGCHC 2 cut(s) 68, 135
SetI ASST 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 84
SphI GCATGC 1 cut(s) 31
Sse9I AATT 2 cut(s) 187, 259
SspMI CTAG 3 cut(s) 23, 183, 356
TaqI TCGA 1 cut(s) 345
TasI AATT 2 cut(s) 187, 259
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 2 cut(s) 37, 226
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 102, 218, 227, 268
VneI GTGCAC 1 cut(s) 64
XceI RCATGY 1 cut(s) 31
XspI CTAG 3 cut(s) 23, 183, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.