Rroxscaffold_1G00058450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001939
Physical Location & Seq
Forward (+)
80342282 .. 80344777
2496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058450.1

Sequence Viewer

Length: 336 bp
ATGCTTCTTCTTCTCTGCTTCACGTTCGTTCTCTTCCCGAAGATTCTCCGATTCGTTTTCCGTTTCCGTCTTCAGTGTCTAGAAGTTTATGGTTTTCTGAATTTGACGTGTTGTTTCCGAAGTAAGTTCTGTACAAAGTTTGAGAAAAATTGCAAGATCTGCTGGAGTAACATGATAACAGAGCACAGCCAAGCCATTTTGAACTCTTTGTACTCATTTTTACTGGGACTTGACAAGAGATTGGGAGTTGAGTTGGATGGATATGCGGCTAGGAGCATGAAGATTAATTATGTAGTCGGCTCCTACCTTGATCCCCTTACCGTTAAGGTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

13.02

Weight (kDa)

9.17

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 330
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 305
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 133, 212
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 1 cut(s) 202
AjiI CACGTC 1 cut(s) 108
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 100
AseI ATTAAT 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 186
BccI CCATC 1 cut(s) 251
BfaI CTAG 2 cut(s) 80, 270
BglII AGATCT 1 cut(s) 156
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmgBI CACGTC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 186
Bsp1407I TGTACA 1 cut(s) 131
Bsp143I GATC 2 cut(s) 156, 310
BspACI CCGC 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 131
BsrI ACTGG 1 cut(s) 228
BssMI GATC 2 cut(s) 156, 310
BssNAI GTATAC 1 cut(s) 331
Bst1107I GTATAC 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 131
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 2 cut(s) 159, 313
BstMBI GATC 2 cut(s) 156, 310
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BstZ17I GTATAC 1 cut(s) 331
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 80
Csp6I GTAC 2 cut(s) 132, 211
CviAII CATG 2 cut(s) 172, 277
CviJI RGCY 4 cut(s) 189, 194, 269, 300
CviKI_1 RGCY 4 cut(s) 189, 194, 269, 300
CviQI GTAC 2 cut(s) 132, 211
DpnI GATC 2 cut(s) 158, 312
DpnII GATC 2 cut(s) 156, 310
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 56
FaeI CATG 2 cut(s) 175, 280
FaiI YATR 6 cut(s) 90, 173, 264, 278, 291, 331
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 171, 276
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 80, 270
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 184
Hin1II CATG 2 cut(s) 175, 280
HinfI GANTC 2 cut(s) 43, 51
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 50, 99, 119
Hpy188III TCNNGA 2 cut(s) 37, 80
Hpy8I GTNNAC 1 cut(s) 331
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 2 cut(s) 23, 107
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 23, 107
Hsp92II CATG 2 cut(s) 175, 280
Kzo9I GATC 2 cut(s) 156, 310
LmnI GCTCC 2 cut(s) 273, 305
LpnPI CCDG 2 cut(s) 148, 209
MaeI CTAG 2 cut(s) 80, 270
MaeII ACGT 2 cut(s) 23, 107
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 158, 312
MboI GATC 2 cut(s) 156, 310
MboII GAAGA 4 cut(s) 25, 52, 62, 292
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 100, 148, 286
MmeI TCCRAC 1 cut(s) 234
MseI TTAA 2 cut(s) 285, 324
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 156, 310
NlaIII CATG 2 cut(s) 175, 280
NlaIV GGNNCC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 43, 51
PkrI GCNGC 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 301
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 2 cut(s) 133, 212
RsaNI GTAC 2 cut(s) 132, 211
SaqAI TTAA 2 cut(s) 285, 324
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 156, 310
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 26, 110, 309, 330
Sse9I AATT 3 cut(s) 100, 148, 286
SsiI CCGC 1 cut(s) 266
SspMI CTAG 2 cut(s) 80, 270
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 2 cut(s) 26, 110
TasI AATT 3 cut(s) 100, 148, 286
TatI WGTACW 2 cut(s) 131, 210
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 43, 51
Tru1I TTAA 2 cut(s) 285, 324
Tru9I TTAA 2 cut(s) 285, 324
TscAI CASTG 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 50, 56
TspRI CASTG 1 cut(s) 80
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 2 cut(s) 80, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.