Rh4DG354700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001939
Physical Location & Seq
Forward (+)
57586599 .. 57596336
9738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG354700.1

Sequence Viewer

Length: 558 bp
ATGGAAGCACTTAATGTTCCCATGGCTGACACACCGGTCATCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTCATTCACTGAGAAGTGGGAAGCAATATCTCTGAAAAACAATAGATTTAGTGGTCCAATTCCACCTTCCATTGGCAATCTAGCCAATCTTGTCTTTCTGGACCTATCGGACAACATGCTTGGGGATTCCATTCCACTCTCTAATGGGACTGCACCTGGTCTTGATATGTTAAATAAAACAAAGCACTTTCATTTTTCAAATAACCAGCTCTCGGGCAGCATTCCATCTCAACTGTTCAACTCAAATATGCCTCTGATACATTTTACCAATAAGGTGTTACATGCTTTGCAACAGAAGTTCCCAGCCGCGTCAAAGACTCAGTTAAGGAATAAAGTGCGAGATATATCAGATTTTGTGGATACCCATTGGCAGATCTGCTGGAATAACGTGATAACAGAGCACAGCGAAGCCATTTTGAACTCTTTGTACTCATTTTACTGGAACGTGACAAGAAATTGGGAGTTGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

185

Amino Acids

21.14

Weight (kDa)

6.28

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cac1_C PF21796 118 - 153 6.6e-11 Chromatin assembly factor 1 subunit Cac1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccII CGCG 1 cut(s) 392
AciI CCGC 1 cut(s) 390
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 2 cut(s) 155, 295
AgeI ACCGGT 1 cut(s) 34
AgsI TTSAA 3 cut(s) 282, 322, 502
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw21I GWGCWC 1 cut(s) 486
Ama87I CYCGRG 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 300
AsiGI ACCGGT 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 137, 184
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 2 cut(s) 137, 184
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 240
BciVI GTATCC 1 cut(s) 436
BfaI CTAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 436
BglII AGATCT 1 cut(s) 456
BisI GCNGC 2 cut(s) 301, 390
BlsI GCNGC 2 cut(s) 302, 391
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 2 cut(s) 137, 184
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 137, 184
BmrFI CCNGG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 295
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 155, 295
BseMII CTCAG 2 cut(s) 84, 416
BseNI ACTGG 1 cut(s) 527
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 392
BshTI ACCGGT 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 155, 295
BsmFI GGGAC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 85, 415
BspFNI CGCG 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 527
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 93, 402
BstDSI CCRYGG 1 cut(s) 21
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 1 cut(s) 459
BstMBI GATC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 2 cut(s) 202, 368
BstSCI CCNGG 1 cut(s) 238
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuI GTATCC 1 cut(s) 436
BtgI CCRYGG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 137, 184
CseI GACGC 1 cut(s) 381
CsiI ACCWGGT 1 cut(s) 238
Csp6I GTAC 1 cut(s) 511
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 3 cut(s) 22, 199, 365
CviJI RGCY 5 cut(s) 26, 167, 292, 389, 494
CviKI_1 RGCY 5 cut(s) 26, 167, 292, 389, 494
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 2 cut(s) 93, 402
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 137, 184
Eco88I CYCGRG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 25, 202, 368
FaiI YATR 7 cut(s) 23, 81, 200, 251, 332, 366, 428
FaqI GGGAC 1 cut(s) 244
FatI CATG 3 cut(s) 21, 198, 364
Fnu4HI GCNGC 2 cut(s) 301, 390
Fsp4HI GCNGC 2 cut(s) 301, 390
FspBI CTAG 1 cut(s) 164
GluI GCNGC 2 cut(s) 301, 390
GsaI CCCAGC 1 cut(s) 389
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 381
Hin1II CATG 3 cut(s) 25, 202, 368
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 209, 400
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 4 cut(s) 117, 193, 339, 433
Hpy188III TCNNGA 2 cut(s) 182, 245
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 47, 159
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4IV ACGT 2 cut(s) 471, 528
HpyCH4V TGCA 2 cut(s) 236, 373
HpyF3I CTNAG 2 cut(s) 93, 402
HpySE526I ACGT 2 cut(s) 471, 528
Hsp92II CATG 3 cut(s) 25, 202, 368
Kzo9I GATC 1 cut(s) 456
LpnPI CCDG 8 cut(s) 48, 167, 225, 252, 302, 399, 448, 508
Lsp1109I GCAGC 1 cut(s) 312
MabI ACCWGGT 1 cut(s) 238
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 471, 528
MaeIII GTNAC 2 cut(s) 360, 529
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 3 cut(s) 76, 141, 538
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 2 cut(s) 345, 543
MseI TTAA 3 cut(s) 12, 254, 407
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 392
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 456
NlaIII CATG 3 cut(s) 25, 202, 368
NmuCI GTSAC 1 cut(s) 529
NspI RCATGY 2 cut(s) 202, 368
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 2 cut(s) 302, 391
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 1 cut(s) 238
PspPI GGNCC 2 cut(s) 137, 184
PsrI GAACNNNNNNTAC 2 cut(s) 494, 526
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SaqAI TTAA 3 cut(s) 12, 254, 407
SatI GCNGC 2 cut(s) 301, 390
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 137, 184
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 486
SetI ASST 8 cut(s) 47, 151, 189, 241, 294, 360, 474, 531
SexAI ACCWGGT 1 cut(s) 238
SinI GGWCC 2 cut(s) 137, 184
Sse9I AATT 3 cut(s) 76, 141, 538
SsiI CCGC 1 cut(s) 390
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 318
TaiI ACGT 2 cut(s) 474, 531
TasI AATT 3 cut(s) 76, 141, 538
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 12, 254, 407
Tru9I TTAA 3 cut(s) 12, 254, 407
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 2 cut(s) 75, 263
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 137, 184
XceI RCATGY 2 cut(s) 202, 368
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.