Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

47676914 .. 47685197

Gene Structure 8284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGGTGCAGCAGATTGGCCTTCGTCTCTGTTCGGGTTTTCTCCTCTCCTAACACAAAGTTGCAGACCCATTATTCCTCGCAAACCAATCTCTCTTCCTCTCACTTTGAAGCTTCTTCTTCTCTGCTTCAGGTGTCTGTCATTCAGTCGTGCTCCCAAAGTACCAATAAGGTGTTACAAGCTTTCCAACAGAAGTTCCCAGTCGCTTCAAAGACTCAGTTAAGGAATAAAATGCCCTACTTTATATACTGTACGGTCCCGTTGTTGGCTGAAGTCGTCAAATCGGAAAGGGCTGCAAACTATGCCCTGGATCAGGCCAGTTCTCCATCCGATGCAGAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

114

Amino Acids

12.57

Weight (kDa)

9.15

Isoelectric Point (pI)

78.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cac1_C	PF21796	45 - 77	1.2e-07	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	113, 291
AfaI	GTAC	2 cut(s)	163, 253
AfiI	CCNNNNNNNGG	2 cut(s)	265, 313
AgsI	TTSAA	2 cut(s)	110, 210
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	113, 182
AluI	AGCT	2 cut(s)	113, 182
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	2 cut(s)	18, 315
ApeKI	GCWGC	2 cut(s)	9, 293
AspS9I	GGNCC	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	21, 280
BccI	CCATC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	10, 294
BlsI	GCNGC	2 cut(s)	11, 295
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 313
Bse1I	ACTGG	2 cut(s)	200, 318
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	265, 313
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	200, 318
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	21, 280
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	20, 317
BsiHKAI	GWGCWC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	265, 313
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	20, 317
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	310
BspANI	GGCC	2 cut(s)	20, 317
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	200, 318
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	251, 256
Bst6I	CTCTTC	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	216
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	21, 280
BsuRI	GGCC	2 cut(s)	20, 317
BtsCI	GGATG	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	162, 252
CviJI	RGCY	6 cut(s)	20, 113, 182, 269, 293, 317
CviKI_1	RGCY	6 cut(s)	20, 113, 182, 269, 293, 317
CviQI	GTAC	2 cut(s)	162, 252
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	113, 291
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	31
FaiI	YATR	3 cut(s)	245, 247, 303
FaqI	GGGAC	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	10, 294
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	10, 294
GluI	GCNGC	2 cut(s)	10, 294
HaeIII	GGCC	2 cut(s)	20, 317
HindIII	AAGCTT	2 cut(s)	111, 180
HinfI	GANTC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	286, 331
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	251, 256
HpyCH4V	TGCA	4 cut(s)	9, 64, 296, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	116, 213, 293, 299, 320, 331
Lsp1109I	GCAGC	2 cut(s)	21, 280
LweI	GCATC	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	87, 108, 111
MhlI	GDGCHC	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	3 cut(s)	55, 88, 109
MseI	TTAA	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	11, 295
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	163, 253
RsaNI	GTAC	2 cut(s)	162, 252
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	10, 294
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	4 cut(s)	115, 135, 174, 184
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	251, 256
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseI	GCWGC	2 cut(s)	9, 293
VpaK11BI	GGWCC	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.