Rh5BG370300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001939
Physical Location & Seq
Forward (+)
58213704 .. 58240642
26939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG370300.1

Sequence Viewer

Length: 288 bp
ATGCATGTCCGGTATCCCTTGTCGGCATATCTCAAGATACAGGGTGAGTCAAACATTACTCATTGCGAGCTTCATAATCGGAACCCAGATCAAAAGTTGGATGGATATGCGGCTAGGAGCATGAAGATTAATTATGTAGTCGGCTCCTACCTTGATCCCCTTACCGTTAAGTATTTCTTATCAAGGTCCATCATATATATTTTCATTTTATCACTTTCATGCATTTTGTTGGGGGTAAATGATGAGACTGAGTTTGGTACCATTACCGAGACCGTGTTGGAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.93

Weight (kDa)

5.83

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 149
AfaI GTAC 1 cut(s) 259
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 239, 263
AlwI GGATC 1 cut(s) 149
AseI ATTAAT 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 257
BccI CCATC 2 cut(s) 95, 197
BciVI GTATCC 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 239, 263
BfaI CTAG 1 cut(s) 114
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 3 cut(s) 83, 145, 259
BpuEI CTTGAG 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 61
BseGI GGATG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 2 cut(s) 239, 263
Bso31I GGTCTC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 88, 154
BspACI CCGC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 83, 145, 259
BspPI GGATC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 2 cut(s) 88, 154
Bst4CI ACNGT 2 cut(s) 166, 274
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 2 cut(s) 91, 157
BstMAI GTCTC 2 cut(s) 239, 263
BstMBI GATC 2 cut(s) 88, 154
BstNSI RCATGY 1 cut(s) 8
BsuI GTATCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 258
CviAII CATG 3 cut(s) 5, 121, 219
CviJI RGCY 3 cut(s) 70, 113, 144
CviKI_1 RGCY 3 cut(s) 70, 113, 144
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 90, 156
DpnII GATC 2 cut(s) 88, 154
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 186
EcoT22I ATGCAT 2 cut(s) 6, 224
FaeI CATG 3 cut(s) 8, 124, 222
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 3 cut(s) 4, 120, 218
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 111
HapII CCGG 1 cut(s) 10
Hin1II CATG 3 cut(s) 8, 124, 222
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 166, 274
HpyCH4V TGCA 2 cut(s) 4, 222
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 3 cut(s) 8, 124, 222
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 88, 154
LmnI GCTCC 2 cut(s) 117, 149
LpnPI CCDG 3 cut(s) 23, 26, 99
MaeI CTAG 1 cut(s) 114
MalI GATC 2 cut(s) 90, 156
MboI GATC 2 cut(s) 88, 154
MboII GAAGA 1 cut(s) 136
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 2 cut(s) 78, 258
Mph1103I ATGCAT 2 cut(s) 6, 224
MseI TTAA 2 cut(s) 129, 168
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 1 cut(s) 10
NdeII GATC 2 cut(s) 88, 154
NlaIII CATG 3 cut(s) 8, 124, 222
NlaIV GGNNCC 3 cut(s) 83, 145, 259
NsiI ATGCAT 2 cut(s) 6, 224
NspI RCATGY 1 cut(s) 8
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 83, 145, 259
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 129, 168
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 88, 154
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 56
SetI ASST 3 cut(s) 72, 153, 188
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 166, 274
TasI AATT 1 cut(s) 130
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 129, 168
Tru9I TTAA 2 cut(s) 129, 168
TspDTI ATGAA 4 cut(s) 62, 137, 193, 207
VpaK11BI GGWCC 1 cut(s) 186
VspI ATTAAT 1 cut(s) 129
XceI RCATGY 1 cut(s) 8
XspI CTAG 1 cut(s) 114
Zsp2I ATGCAT 2 cut(s) 6, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.