Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Forward (+)

19018665 .. 19020763

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTCATTTGCTTTTCCATTTTTGTGCAGTGTTGTTTCCGAAGTAAGTTCTGTACAAAGTTTGAGGTATTTAAATTGATGAATAAATTACGATATGAAAAGGAGAAATACAATGCCACACTTGTAGCTGCTTGTTTAATAGCCACAACACTTTATATATATCTTCTGGAACCGTACCCTTTGAATATATTTGTGTCTAGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

8.07

Weight (kDa)

8.9

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	55, 176
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	128, 201
AluI	AGCT	2 cut(s)	128, 201
ApeKI	GCWGC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	174
BstAUI	TGTACA	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	54, 175
CviJI	RGCY	3 cut(s)	128, 143, 201
CviKI_1	RGCY	3 cut(s)	128, 143, 201
CviQI	GTAC	2 cut(s)	54, 175
DraI	TTTAAA	1 cut(s)	73
FaiI	YATR	6 cut(s)	96, 156, 158, 160, 188, 205
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	28
LpnPI	CCDG	1 cut(s)	152
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	198
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	2 cut(s)	74, 86
MnlI	CCTC	1 cut(s)	58
MseI	TTAA	2 cut(s)	72, 137
MslI	CAYNNNNRTG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	171
RsaI	GTAC	2 cut(s)	55, 176
RsaNI	GTAC	2 cut(s)	54, 175
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	72, 137
SatI	GCNGC	1 cut(s)	129
SetI	ASST	3 cut(s)	69, 130, 203
SgeI	CNNG	3 cut(s)	134, 144, 179
SmiI	ATTTAAAT	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	74, 86
SspMI	CTAG	1 cut(s)	198
SwaI	ATTTAAAT	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	174
TasI	AATT	2 cut(s)	74, 86
TatI	WGTACW	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	72, 137
Tru9I	TTAA	2 cut(s)	72, 137
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	95, 111
TspRI	CASTG	1 cut(s)	35
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.