Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

9343351 .. 9344812

Gene Structure 1462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0106400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGAACCTTAAGATGACAACTAAATATGGTGCAATGGCGTCAGCCGTTTTTGCCAGTATCTTTGTTGCAGGGATTTATTTTGTTCGTGGACGTTCTCGGAGAAAGGAAGATCCCCCAAGACTCATGAGGTCTATGTCCATGGCTGTCCTCCATGGAGGGTATCTGGCCTTGAAGAGATTGCTAGAATATCATGAAGCTCGAGCAGACAAATTTGCACTGAATCAAGTTGAATGTGACTTTAAGACTCACCTTCTTACTAAGAAACGCCCTAATTACAAGAAGCTGACGTCGATTCTTGCAAAGCTTGAGATGAGTGGAAAAGAAGCCGAGACAGTCGAGATATTAGAGAAAACAAGAACAAAGGCTAAAAATGAACAAAAATGGCATGAAGCATATGAAACTGAGATGTTACTAGTGGAAATGCTTATACAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

9.68

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	41, 290
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	175, 233
AhlI	ACTAGT	1 cut(s)	415
AluBI	AGCT	3 cut(s)	200, 286, 307
AluI	AGCT	3 cut(s)	200, 286, 307
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	16, 242
AvaI	CYCGRG	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	326
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	2 cut(s)	185, 416
BfrI	CTTAAG	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	2 cut(s)	41, 290
BsaJI	CCNNGG	2 cut(s)	141, 154
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	141, 154
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	112
Bsp19I	CCATGG	2 cut(s)	141, 154
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	397
BspHI	TCATGA	2 cut(s)	126, 193
BspPI	GGATC	1 cut(s)	107
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	141, 154
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	2 cut(s)	41, 290
BssT1I	CCWWGG	2 cut(s)	141, 154
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	2 cut(s)	41, 290
BstAFI	CTTAAG	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	261, 405
BstDSI	CCRYGG	2 cut(s)	141, 154
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	2 cut(s)	141, 154
BtsIMutI	CAGTG	1 cut(s)	218
CciI	TCATGA	2 cut(s)	126, 193
CseI	GACGC	1 cut(s)	30
CviAII	CATG	5 cut(s)	127, 142, 155, 194, 389
CviJI	RGCY	8 cut(s)	47, 146, 170, 200, 286, 307, 329, 368
CviKI_1	RGCY	8 cut(s)	47, 146, 170, 200, 286, 307, 329, 368
DdeI	CTNAG	2 cut(s)	261, 405
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	141, 154
Eco88I	CYCGRG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	141, 154
ErhI	CCWWGG	2 cut(s)	141, 154
FaeI	CATG	5 cut(s)	130, 145, 158, 197, 392
FatI	CATG	5 cut(s)	126, 141, 154, 193, 388
FauNDI	CATATG	1 cut(s)	397
FspBI	CTAG	2 cut(s)	185, 416
HaeIII	GGCC	1 cut(s)	170
HgaI	GACGC	1 cut(s)	30
Hin1I	GRCGYC	2 cut(s)	41, 290
Hin1II	CATG	5 cut(s)	130, 145, 158, 197, 392
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	123, 223, 247, 295
HphI	GGTGA	2 cut(s)	16, 242
Hpy166II	GTNNAC	2 cut(s)	7, 92
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	3 cut(s)	127, 194, 340
Hpy8I	GTNNAC	2 cut(s)	7, 92
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	94, 290
HpyCH4V	TGCA	4 cut(s)	35, 71, 218, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	261, 405
HpySE526I	ACGT	2 cut(s)	94, 290
Hsp92I	GRCGYC	2 cut(s)	41, 290
Hsp92II	CATG	5 cut(s)	130, 145, 158, 197, 392
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	57, 70, 152
MaeI	CTAG	2 cut(s)	185, 416
MaeII	ACGT	2 cut(s)	94, 290
MaeIII	GTNAC	2 cut(s)	236, 411
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	122, 187
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	2 cut(s)	212, 274
MlyI	GAGTC	2 cut(s)	117, 241
MnlI	CCTC	3 cut(s)	123, 152, 161
MseI	TTAA	2 cut(s)	12, 243
MspCI	CTTAAG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	2 cut(s)	141, 154
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	5 cut(s)	130, 145, 158, 197, 392
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	201
PagI	TCATGA	2 cut(s)	126, 193
PfeI	GAWTC	2 cut(s)	223, 295
PleI	GAGTC	2 cut(s)	117, 241
PpsI	GAGTC	2 cut(s)	117, 241
PspXI	VCTCGAGB	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	12, 243
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	117, 241
SetI	ASST	8 cut(s)	12, 97, 134, 202, 255, 288, 293, 309
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	3 cut(s)	11, 201, 308
SmoI	CTYRAG	3 cut(s)	11, 201, 308
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	2 cut(s)	212, 274
SspMI	CTAG	2 cut(s)	185, 416
StyI	CCWWGG	2 cut(s)	141, 154
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	97, 293
TaqI	TCGA	3 cut(s)	202, 293, 339
TasI	AATT	2 cut(s)	212, 274
TfiI	GAWTC	2 cut(s)	223, 295
Tru1I	TTAA	2 cut(s)	12, 243
Tru9I	TTAA	2 cut(s)	12, 243
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	210, 390, 405, 414
TspRI	CASTG	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	201
XspI	CTAG	2 cut(s)	185, 416
ZraI	GACGTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.