Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006806.1

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

82858 .. 85336

Gene Structure 2479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006806.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaatagagagtggattcattctaaaaacaaactcagccaagaatacaaggatggtattcagtctttcattgatattgcaaaacatcatttggatgcaaataatgagacattatgtccttgtgttaagtgtcagaattatgaaccacattctctttcagttataagataccatttagctaagaatgggatggcagtgacttatgagacatggactgaacatggagaaacaaaggcaccgcaaatggatgtcggtcaagaggagcgtggaccaaatgatgatgtgtttgatattttgaatgatgtattcccacaagaaaatctaatggatcaagatttagagggggatgatgattcattgggaagtagtcaagaacatgctgaggtggacgatgggtccaatatgcatagggtagaagctgataagtatgaaaaattgcttgctgaagctgaaagagagttcttccctggttcccaatttagtgttttaacggctatgagaggctctcgctctatatcgccgttttctatggctgagcctgtcctgctgcgcctcggcgctggcaatggcctctggcctagcctgtgcacgatgtgttcggccggatggttgttttgttccgtgatcgtatctcaggctcggaggctaggttcaggaaaggcacttgttgtgcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transposase_21

Protein Analysis

225

Amino Acids

25.21

Weight (kDa)

4.93

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	235
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	465
AdeI	CACNNNGTG	1 cut(s)	594
AgsI	TTSAA	1 cut(s)	298
AhdI	GACNNNNNGTC	2 cut(s)	114, 394
AjnI	CCWGG	1 cut(s)	466
AloI	GAACNNNNNNTCC	2 cut(s)	634, 666
AluBI	AGCT	3 cut(s)	179, 419, 449
AluI	AGCT	3 cut(s)	179, 419, 449
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	2 cut(s)	101, 200
Alw44I	GTGCAC	1 cut(s)	586
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	3 cut(s)	568, 575, 600
ApaLI	GTGCAC	1 cut(s)	586
ApeKI	GCWGC	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	552, 560
AspS9I	GGNCC	2 cut(s)	269, 396
AvaII	GGWCC	2 cut(s)	269, 396
BaeGI	GKGCMC	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	590
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	4 cut(s)	47, 184, 386, 600
BceAI	ACGGC	2 cut(s)	505, 507
BciT130I	CCWGG	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	101, 200
BfaI	CTAG	2 cut(s)	579, 647
BfoI	RGCGCY	1 cut(s)	561
BisI	GCNGC	1 cut(s)	548
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	549
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	2 cut(s)	269, 396
BmeRI	GACNNNNNGTC	2 cut(s)	114, 394
BmgT120I	GGNCC	2 cut(s)	269, 396
BmiI	GGNNCC	3 cut(s)	237, 397, 472
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	490, 522
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	466, 553
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bse3DI	GCAATG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	466, 553
BseGI	GGATG	6 cut(s)	58, 100, 195, 253, 352, 611
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	4 cut(s)	49, 372, 525, 647
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	590
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	570, 577, 602
BshNI	GGYRCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	603
BsmAI	GTCTC	2 cut(s)	101, 200
BsnI	GGCC	3 cut(s)	570, 577, 602
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	2 cut(s)	328, 624
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	3 cut(s)	570, 577, 602
BspCNI	CTCAG	4 cut(s)	48, 373, 526, 646
BspLI	GGNNCC	3 cut(s)	237, 397, 472
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	466, 553
BssMI	GATC	2 cut(s)	328, 624
Bst2UI	CCWGG	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	441, 562
BstDEI	CTNAG	5 cut(s)	35, 180, 381, 534, 633
BstF5I	GGATG	6 cut(s)	58, 100, 195, 253, 352, 611
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	552, 560
BstKTI	GATC	2 cut(s)	331, 627
BstMAI	GTCTC	2 cut(s)	101, 200
BstMBI	GATC	2 cut(s)	328, 624
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	590
BstV1I	GCAGC	1 cut(s)	534
BstZI	CGGCCG	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	570, 577, 602
BtsCI	GGATG	6 cut(s)	58, 100, 195, 253, 352, 611
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	441, 562
CfoI	GCGC	2 cut(s)	552, 560
Cfr13I	GGNCC	2 cut(s)	269, 396
CviAII	CATG	3 cut(s)	210, 221, 377
DdeI	CTNAG	5 cut(s)	35, 180, 381, 534, 633
DpnI	GATC	2 cut(s)	330, 626
DpnII	GATC	2 cut(s)	328, 624
DraIII	CACNNNGTG	1 cut(s)	594
DriI	GACNNNNNGTC	2 cut(s)	114, 394
EaeI	YGGCCR	1 cut(s)	600
EagI	CGGCCG	1 cut(s)	600
Eam1105I	GACNNNNNGTC	2 cut(s)	114, 394
EclXI	CGGCCG	1 cut(s)	600
Eco47I	GGWCC	2 cut(s)	269, 396
Eco52I	CGGCCG	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	466
EcoT22I	ATGCAT	1 cut(s)	408
FaeI	CATG	3 cut(s)	213, 224, 380
FatI	CATG	3 cut(s)	209, 220, 376
Fnu4HI	GCNGC	1 cut(s)	548
FokI	GGATG	6 cut(s)	65, 107, 202, 260, 359, 618
Fsp4HI	GCNGC	1 cut(s)	548
FspBI	CTAG	2 cut(s)	579, 647
GlaI	GCGC	2 cut(s)	551, 559
GluI	GCNGC	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	570, 577, 602
HapII	CCGG	1 cut(s)	603
HhaI	GCGC	2 cut(s)	552, 560
Hin1II	CATG	3 cut(s)	213, 224, 380
Hin6I	GCGC	2 cut(s)	550, 558
HinP1I	GCGC	2 cut(s)	550, 558
HinfI	GANTC	2 cut(s)	16, 353
HpaII	CCGG	1 cut(s)	603
Hpy166II	GTNNAC	3 cut(s)	269, 388, 588
Hpy188I	TCNGA	2 cut(s)	135, 642
Hpy188III	TCNNGA	4 cut(s)	257, 332, 371, 654
Hpy8I	GTNNAC	3 cut(s)	269, 388, 588
HpyCH4V	TGCA	4 cut(s)	80, 98, 406, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	5 cut(s)	35, 180, 381, 534, 633
Hsp92II	CATG	3 cut(s)	213, 224, 380
HspAI	GCGC	2 cut(s)	550, 558
Kzo9I	GATC	2 cut(s)	328, 624
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	579, 647
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	330, 626
MboI	GATC	2 cut(s)	328, 624
MboII	GAAGA	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	3 cut(s)	136, 434, 476
MnlI	CCTC	7 cut(s)	253, 334, 376, 494, 563, 581, 636
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	2 cut(s)	126, 488
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	2 cut(s)	328, 624
NlaIII	CATG	3 cut(s)	213, 224, 380
NlaIV	GGNNCC	3 cut(s)	237, 397, 472
NmeAIII	GCCGAG	1 cut(s)	534
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	16, 353
PkrI	GCNGC	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	3 cut(s)	237, 397, 472
PspPI	GGNCC	2 cut(s)	269, 396
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	126, 488
SatI	GCNGC	1 cut(s)	548
Sau3AI	GATC	2 cut(s)	328, 624
Sau96I	GGNCC	2 cut(s)	269, 396
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	5 cut(s)	181, 387, 421, 451, 652
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	2 cut(s)	269, 396
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	136, 434, 476
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	579, 647
StyD4I	CCNGG	1 cut(s)	466
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	136, 434, 476
TfiI	GAWTC	2 cut(s)	16, 353
Tru1I	TTAA	2 cut(s)	126, 488
Tru9I	TTAA	2 cut(s)	126, 488
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	6 cut(s)	8, 17, 58, 156, 345, 444
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	201
VneI	GTGCAC	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	269, 396
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	2 cut(s)	579, 647
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.