Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

60515270 .. 60520279

Gene Structure 5010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG406200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGATAGAAAATGGATAAAAAATCTGAACAAGTTGAGTGATGAGTACAAGCGCGATGTTCAGTCATTTCTTGAAGTTGCAAGCAAGCATGTGGATGTTAAAGGCAGAACTAGATGTCCTTGCATCAAGTGCCTAAACCATGATCGTCAAACTATACCAGTTGTGAAGATACATTTGAGAAACTATGGCATATCTTCGAGTTATGACATCTGCACATCTCATGGAGAAACAGTGCAACAGCGATCACAAATTCTTTCTCCCCCAATGGCTGAACAGATTGTTCGAGCCAATGATGTTGTGCATGATATTTTGAATGATGCATTCCCACCTACTGACATGGATGATATAGCTCAAGATCTAGAGAAGGATGAGATACAAGGAGGCAATGAAGATGTGATGGATAATCATGGATCTAATGGGATGAGAAGCGATGCTGATCAGATGTTGAAACCGAAGTCATTATTGATGAAGAAGATTGGGAATAAGCCATCTGCCAAAAATATTACAACAGAGTTGCAACTAGAGCATCCCCCGCAACAACAGAAAAAGCAGCCACAACAATTAGGAAAGAGACTGCCACAACAACCAGCAAAGAGACAGCCACAACAACTAGGAAAGAGGCAGCCACAACCACCACAGTTGCAACAACCTGAGCCATCACAGCAGCGACAACCACAACCACCATTACATTCTAGTGAAAGACCATATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transposase_21

Protein Analysis

237

Amino Acids

27.06

Weight (kDa)

8.97

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	3 - 76	1.2e-16	Transposase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	74, 313, 448
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	565, 589
AlwI	GGATC	1 cut(s)	418
ApeKI	GCWGC	3 cut(s)	550, 622, 664
ApoI	RAATTY	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	562, 634, 676
BccI	CCATC	3 cut(s)	391, 496, 664
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	565, 589
BfaI	CTAG	5 cut(s)	111, 359, 521, 611, 693
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	3 cut(s)	551, 623, 665
BlsI	GCNGC	3 cut(s)	552, 624, 666
BmsI	GCATC	4 cut(s)	132, 307, 421, 535
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	435
BseGI	GGATG	5 cut(s)	100, 346, 373, 426, 526
BseJI	GATNNNNATC	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	562, 634, 676
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	565, 589
BsmI	GAATGC	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	142, 242, 355, 410, 436
BspACI	CCGC	1 cut(s)	533
BspCNI	CTCAG	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	5 cut(s)	142, 242, 355, 410, 436
Bst4CI	ACNGT	2 cut(s)	232, 639
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	82, 86
BstDEI	CTNAG	1 cut(s)	651
BstF5I	GGATG	5 cut(s)	100, 346, 373, 426, 526
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	5 cut(s)	145, 245, 358, 413, 439
BstMAI	GTCTC	2 cut(s)	565, 589
BstMBI	GATC	5 cut(s)	142, 242, 355, 410, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 523, 532, 661
BstNSI	RCATGY	1 cut(s)	92
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	562, 634, 676
BstX2I	RGATCY	2 cut(s)	355, 410
BstYI	RGATCY	2 cut(s)	355, 410
BtgZI	GCGATG	2 cut(s)	69, 444
BtsCI	GGATG	5 cut(s)	100, 346, 373, 426, 526
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	82, 86
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	621, 656
CviAII	CATG	6 cut(s)	89, 140, 221, 302, 337, 407
CviJI	RGCY	8 cut(s)	269, 287, 350, 487, 553, 601, 625, 655
CviKI_1	RGCY	8 cut(s)	269, 287, 350, 487, 553, 601, 625, 655
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	651
DpnI	GATC	5 cut(s)	144, 244, 357, 412, 438
DpnII	GATC	5 cut(s)	142, 242, 355, 410, 436
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	6 cut(s)	92, 143, 224, 305, 340, 410
FatI	CATG	6 cut(s)	88, 139, 220, 301, 336, 406
FauI	CCCGC	1 cut(s)	540
FauNDI	CATATG	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	551, 623, 665
FokI	GGATG	5 cut(s)	107, 353, 380, 433, 513
Fsp4HI	GCNGC	3 cut(s)	551, 623, 665
FspBI	CTAG	5 cut(s)	111, 359, 521, 611, 693
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	551, 623, 665
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	6 cut(s)	92, 143, 224, 305, 340, 410
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	27, 441
Hpy188III	TCNNGA	3 cut(s)	71, 353, 359
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	232, 639
HpyCH4V	TGCA	8 cut(s)	80, 123, 213, 235, 301, 320, 517, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 523, 532, 661
HpyF3I	CTNAG	1 cut(s)	651
Hsp92II	CATG	6 cut(s)	92, 143, 224, 305, 340, 410
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	5 cut(s)	142, 242, 355, 410, 436
LpnPI	CCDG	3 cut(s)	171, 600, 663
Lsp1109I	GCAGC	3 cut(s)	562, 634, 676
LweI	GCATC	4 cut(s)	132, 307, 421, 535
MaeI	CTAG	5 cut(s)	111, 359, 521, 611, 693
MalI	GATC	5 cut(s)	144, 244, 357, 412, 438
MboI	GATC	5 cut(s)	142, 242, 355, 410, 436
MboII	GAAGA	5 cut(s)	178, 186, 401, 481, 484
MflI	RGATCY	2 cut(s)	355, 410
MluCI	AATT	2 cut(s)	249, 560
MnlI	CCTC	2 cut(s)	374, 612
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	2 cut(s)	99, 712
MslI	CAYNNNNRTG	2 cut(s)	93, 693
Mva1269I	GAATGC	1 cut(s)	320
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	129, 523, 532, 661
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	5 cut(s)	142, 242, 355, 410, 436
NlaIII	CATG	6 cut(s)	92, 143, 224, 305, 340, 410
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	92
PctI	GAATGC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	552, 624, 666
PsuI	RGATCY	2 cut(s)	355, 410
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	93, 693
SaqAI	TTAA	2 cut(s)	99, 712
SatI	GCNGC	3 cut(s)	551, 623, 665
Sau3AI	GATC	5 cut(s)	142, 242, 355, 410, 436
SetI	ASST	3 cut(s)	331, 352, 652
SfaNI	GCATC	4 cut(s)	132, 307, 421, 535
SmiMI	CAYNNNNRTG	2 cut(s)	93, 693
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	249, 560
SsiI	CCGC	1 cut(s)	533
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	5 cut(s)	111, 359, 521, 611, 693
TaaI	ACNGT	2 cut(s)	232, 639
TaqI	TCGA	2 cut(s)	197, 283
TasI	AATT	2 cut(s)	249, 560
TatI	WGTACW	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	99, 712
Tru9I	TTAA	2 cut(s)	99, 712
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	3 cut(s)	550, 622, 664
TspDTI	ATGAA	2 cut(s)	402, 482
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	1 cut(s)	249
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	5 cut(s)	111, 359, 521, 611, 693
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.