Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

85467951 .. 85470940

Gene Structure 2990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG629800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCGCAGTGGCGGTGCCGTACAAAGGCAGGGCTCGGTCAACAATGGTGCACGGCGTCGATCAAGCGGGGCTCCATGGTGCAGGCAATGTAGTAGGGTGACATGGTTCAGGCGTTGTGGTGCAGATGCCATGGTGCAGGCGACGGGATTGTCAAAACCATATGCGGATGCACCCTATGTACTCCAGTCAAGTGTACTTCACATTAGTTGGCTTTTGGAGGCATGTTCAGCTGTAGCAGAGTTGCTCGACATGCAGCTGATGAGGCAGAGTGAAGGAAAGAGAAGGTGGTCTGATGGGATTCATCAGCCTGTGGAGGCTAAAGAATGTTTGAAGATTCAGACTCTATTCAAAGCTATGGGGATGACCGAGACCGCAAAGACTGAAAGGTCAGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

132

Amino Acids

14.66

Weight (kDa)

9.72

Isoelectric Point (pI)

73.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	148, 385
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	4 cut(s)	12, 66, 164, 372
AcyI	GRCGYC	1 cut(s)	55
AfaI	GTAC	3 cut(s)	21, 180, 195
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	331, 349
AluBI	AGCT	3 cut(s)	230, 256, 353
AluI	AGCT	3 cut(s)	230, 256, 353
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	362
Alw44I	GTGCAC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	35, 73
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	2 cut(s)	2, 68
BcoDI	GTCTC	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	16, 72
BmsI	GCATC	2 cut(s)	115, 157
BpmI	CTGGAG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	74, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	92, 399
BseDI	CCNNGG	2 cut(s)	74, 129
BseGI	GGATG	2 cut(s)	172, 366
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	92, 399
BseNI	ACTGG	1 cut(s)	184
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	3 cut(s)	100, 141, 155
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	3 cut(s)	35, 52, 73
Bsp143I	GATC	1 cut(s)	59
Bsp19I	CCATGG	2 cut(s)	74, 129
BspACI	CCGC	4 cut(s)	12, 66, 164, 372
BspLI	GGNNCC	2 cut(s)	16, 72
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	92, 399
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	74, 129
BssMI	GATC	1 cut(s)	59
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	74, 129
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	83, 138
BstDSI	CCRYGG	2 cut(s)	74, 129
BstF5I	GGATG	2 cut(s)	172, 366
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 250, 262
BstNSI	RCATGY	2 cut(s)	225, 253
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	265
BtgI	CCRYGG	2 cut(s)	74, 129
BtsCI	GGATG	2 cut(s)	172, 366
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	83, 138
CfoI	GCGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	20, 179, 194
CviAII	CATG	5 cut(s)	75, 102, 130, 222, 250
CviJI	RGCY	8 cut(s)	33, 71, 211, 230, 256, 307, 317, 353
CviKI_1	RGCY	8 cut(s)	33, 71, 211, 230, 256, 307, 317, 353
CviQI	GTAC	3 cut(s)	20, 179, 194
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
DrdI	GACNNNNNNGTC	2 cut(s)	148, 385
DseDI	GACNNNNNNGTC	2 cut(s)	148, 385
Eco130I	CCWWGG	2 cut(s)	74, 129
Eco24I	GRGCYC	2 cut(s)	35, 73
Eco31I	GGTCTC	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	74, 129
EcoT38I	GRGCYC	2 cut(s)	35, 73
ErhI	CCWWGG	2 cut(s)	74, 129
FaeI	CATG	5 cut(s)	78, 105, 133, 225, 253
FaiI	YATR	9 cut(s)	76, 103, 131, 160, 162, 177, 223, 251, 356
FatI	CATG	5 cut(s)	74, 101, 129, 221, 249
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	2 cut(s)	179, 373
FriOI	GRGCYC	2 cut(s)	35, 73
Fsp4HI	GCNGC	1 cut(s)	254
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	5 cut(s)	78, 105, 133, 225, 253
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	298, 334, 340
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	40, 50, 194
Hpy188I	TCNGA	2 cut(s)	292, 339
Hpy8I	GTNNAC	3 cut(s)	40, 50, 194
Hpy99I	CGWCG	2 cut(s)	60, 145
HpyAV	CCTTC	2 cut(s)	266, 276
HpyCH4V	TGCA	6 cut(s)	50, 81, 122, 136, 170, 253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 250, 262
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	5 cut(s)	78, 105, 133, 225, 253
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	6 cut(s)	14, 67, 94, 122, 197, 321
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	115, 157
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	343
MhlI	GDGCHC	3 cut(s)	35, 52, 73
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	211, 255, 307
MspA1I	CMGCKG	2 cut(s)	230, 256
MwoI	GCNNNNNNNGC	3 cut(s)	227, 250, 262
NcoI	CCATGG	2 cut(s)	74, 129
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	5 cut(s)	78, 105, 133, 225, 253
NlaIV	GGNNCC	2 cut(s)	16, 72
NmuCI	GTSAC	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	225, 253
PfeI	GAWTC	2 cut(s)	298, 334
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	16, 72
PvuII	CAGCTG	2 cut(s)	230, 256
RsaI	GTAC	3 cut(s)	21, 180, 195
RsaNI	GTAC	3 cut(s)	20, 179, 194
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	334
SduI	GDGCHC	3 cut(s)	35, 52, 73
SetI	ASST	5 cut(s)	232, 258, 287, 355, 389
SfaNI	GCATC	2 cut(s)	115, 157
SfcI	CTRYAG	1 cut(s)	231
SsiI	CCGC	4 cut(s)	12, 66, 164, 372
StyI	CCWWGG	2 cut(s)	74, 129
TaqI	TCGA	2 cut(s)	58, 246
TaqII	GACCGA	2 cut(s)	25, 380
TatI	WGTACW	2 cut(s)	178, 193
TfiI	GAWTC	2 cut(s)	298, 334
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	48
XceI	RCATGY	2 cut(s)	225, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.