Rmu_sc0003314.1_g000040

transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003314.1
OG0001939
Physical Location & Seq
Forward (+)
171943 .. 172479
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003314.1_g000040.1.cds

Sequence Viewer

Length: 537 bp
atggatagggaatggatacttaagcaggacaaattcagtgaagagtataaagaaggggttagatcttttatggaggttgcaaaacatcatgtgaatgagaggaatgagacaatatgtccctgcatggagtgcttgagtaaaagttggcagcctcttcatgttgctcatgtccatttgctacatcatggaatgtcacttgcatatatgaaatggactgatcatggagaacacggagatacattgaccgccgagggtgatgagctaattgacgaacccaatagtttatttgacatgattggtgatctattccctacagaaaatgttggtgatcaacatatcatgagggatgaagatgatataatgatggatgtagatgcatcaagggatgaagaggaaacaataaatgaaattcatttagagggtgatggtaatgaatataacagtaattatgagaagttattgttggaagctcaacgtgaactgtaccctggttgcacagagcacacagtaccttggttacgattattgaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4218 Transpos_assoc Transposase_21

Protein Analysis

178

Amino Acids

20.84

Weight (kDa)

4.65

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AcsI RAATTY 2 cut(s) 32, 408
AfaI GTAC 2 cut(s) 485, 510
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 529
AhdI GACNNNNNGTC 1 cut(s) 114
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 2 cut(s) 262, 470
AluI AGCT 2 cut(s) 262, 470
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 2 cut(s) 32, 408
AsuHPI GGTGA 4 cut(s) 266, 311, 338, 434
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 358, 419
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 1 cut(s) 9
BclI TGATCA 2 cut(s) 217, 328
BcoDI GTCTC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 9
BglII AGATCT 1 cut(s) 62
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 489
BmeRI GACNNNNNGTC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 364, 386
BpuEI CTTGAG 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 249, 487, 512
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 249, 487, 512
BseGI GGATG 3 cut(s) 352, 373, 391
BseXI GCAGC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 504
BslFI GGGAC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 62, 217, 301, 328
BspACI CCGC 1 cut(s) 246
BspHI TCATGA 1 cut(s) 339
BspTI CTTAAG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 249, 487, 512
BssMI GATC 4 cut(s) 62, 217, 301, 328
BssT1I CCWWGG 1 cut(s) 512
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 3 cut(s) 443, 483, 508
Bst6I CTCTTC 3 cut(s) 36, 159, 384
BstAFI CTTAAG 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 129
BstF5I GGATG 3 cut(s) 352, 373, 391
BstKTI GATC 4 cut(s) 65, 220, 304, 331
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 4 cut(s) 62, 217, 301, 328
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuI GTATCC 1 cut(s) 9
BtsCI GGATG 3 cut(s) 352, 373, 391
BtsIMutI CAGTG 1 cut(s) 43
CciI TCATGA 1 cut(s) 339
Csp6I GTAC 2 cut(s) 484, 509
CviAII CATG 8 cut(s) 89, 124, 158, 167, 185, 221, 292, 340
CviJI RGCY 3 cut(s) 151, 262, 470
CviKI_1 RGCY 3 cut(s) 151, 262, 470
CviQI GTAC 2 cut(s) 484, 509
DpnI GATC 4 cut(s) 64, 219, 303, 330
DpnII GATC 4 cut(s) 62, 217, 301, 328
DriI GACNNNNNGTC 1 cut(s) 114
Eam1104I CTCTTC 3 cut(s) 36, 159, 384
Eam1105I GACNNNNNGTC 1 cut(s) 114
EarI CTCTTC 3 cut(s) 36, 159, 384
Eco130I CCWWGG 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 512
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 8 cut(s) 92, 127, 161, 170, 188, 224, 295, 343
FaqI GGGAC 1 cut(s) 102
FatI CATG 8 cut(s) 88, 123, 157, 166, 184, 220, 291, 339
FbaI TGATCA 2 cut(s) 217, 328
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 3 cut(s) 359, 380, 398
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
Hin1II CATG 8 cut(s) 92, 127, 161, 170, 188, 224, 295, 343
HphI GGTGA 4 cut(s) 266, 311, 338, 434
Hpy166II GTNNAC 1 cut(s) 479
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 479
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 3 cut(s) 443, 483, 508
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 5 cut(s) 80, 123, 200, 377, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 8 cut(s) 92, 127, 161, 170, 188, 224, 295, 343
Ksp22I TGATCA 2 cut(s) 217, 328
Kzo9I GATC 4 cut(s) 62, 217, 301, 328
LpnPI CCDG 4 cut(s) 11, 133, 474, 501
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 2 cut(s) 364, 386
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 192, 516
MalI GATC 4 cut(s) 64, 219, 303, 330
MboI GATC 4 cut(s) 62, 217, 301, 328
MboII GAAGA 4 cut(s) 53, 146, 362, 401
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 4 cut(s) 32, 264, 408, 445
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 7 cut(s) 67, 93, 162, 244, 336, 385, 412
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 93
MspCI CTTAAG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 4 cut(s) 62, 217, 301, 328
NlaIII CATG 8 cut(s) 92, 127, 161, 170, 188, 224, 295, 343
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 379
PagI TCATGA 1 cut(s) 339
PkrI GCNGC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 2 cut(s) 485, 510
RsaNI GTAC 2 cut(s) 484, 509
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 4 cut(s) 62, 217, 301, 328
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 504
SetI ASST 5 cut(s) 78, 264, 472, 478, 514
SfaNI GCATC 2 cut(s) 364, 386
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 2 cut(s) 20, 133
SmoI CTYRAG 2 cut(s) 20, 133
Sse9I AATT 4 cut(s) 32, 264, 408, 445
SsiI CCGC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 3 cut(s) 443, 483, 508
TaiI ACGT 1 cut(s) 478
TasI AATT 4 cut(s) 32, 264, 408, 445
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 7 cut(s) 146, 221, 363, 401, 402, 420, 447
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 43
Vha464I CTTAAG 1 cut(s) 20
XapI RAATTY 2 cut(s) 32, 408
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.