Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001939

Physical Location & Seq

Genomic Coordinates Reverse (-)

25644844 .. 25646170

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACTCTAGTCCCTCTGTTCGTGGGTTTAGGGTGCAGCAGATTGGCCTTCATCTCTGTTCGGGTTTTCTCCTCTCCCAACACAAAGTTGCAGACCCATAATTCCTCGCAAACCAATCTCTCTTCCTCTCACTTTAAAGCTTCTTCTTTTCTGCTTCAGGTGTCTGTCATTCAGTCGTGCTCCCAAAGTATCAATAAGGTGTTACAAGCTTTGCAGCAGAAGTTCCCAGCTGCGTCAAAGACTCAGTTAAGGATAATTAGACCTGGGTCTGAACCTAAGCGATACTCTATTATCCCTTTATGCAAGATCTGGTGGAGTAGCGTGATAACAGAGCACATCCAAGGCATTTTGAACTCTTTGTACTCATTTCACTGGAGCTTGACTAGAGATTGGGAGTTGAGTGCCCATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

138

Amino Acids

15.43

Weight (kDa)

10.12

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cac1_C	PF21796	54 - 84	2.2e-08	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001939)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G092800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383451 RchiOBHm_Chr2g0125501 RchiOBHm_Chr2g0171631 RchiOBHm_Chr2g0171641 RchiOBHm_Chr5g0011851 RchiOBHm_Chr5g0025001 RchiOBHm_Chr6g0253951
rosa_laevigata	RLG00000010447 RLG00000022025 RLG00000033319
rosa_multiflora	Rmu_co8441523.1_g000001 Rmu_sc0000012.1_g000008 Rmu_sc0001552.1_g000047 Rmu_sc0003158.1_g000011 Rmu_sc0003314.1_g000040 Rmu_sc0004347.1_g000014 Rmu_sc0005457.1_g000012 Rmu_sc0005523.1_g000007 Rmu_sc0006806.1_g000031
rosa_roxburghii	Rroxscaffold_1G00003330 Rroxscaffold_1G00058450 Rroxscaffold_2G00080560 Rroxscaffold_3G00249960 Rroxscaffold_3G00250370 Rroxscaffold_5G00347440
rosa_rugosa	Rorug02G0501200 Rorug04G0073700 Rorug05G0106400 Rorug07G0308700
rosa_samantha	Rh1AG212100 Rh2AG406200 Rh2AG629800 Rh2BG224700 Rh2BG640400 Rh2BG642700 Rh2CG608800 Rh2CG608900 Rh2DG651300 Rh2DG657000 Rh4DG354700 Rh5BG072900 Rh5BG370300 Rh5CG214900 Rh6BG397100 Rh7CG378700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	4 cut(s)	140, 209, 230, 378
AluI	AGCT	4 cut(s)	140, 209, 230, 378
Alw21I	GWGCWC	2 cut(s)	182, 336
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	36, 214, 230
BaeGI	GKGCMC	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	182, 336
BbvI	GCAGC	3 cut(s)	48, 217, 226
BciT130I	CCWGG	1 cut(s)	264
BfaI	CTAG	2 cut(s)	8, 384
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	3 cut(s)	37, 215, 231
BlsI	GCNGC	3 cut(s)	38, 216, 232
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BoxI	GACNNNNGTC	2 cut(s)	8, 265
BpmI	CTGGAG	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	263, 340
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	263, 340
BseGI	GGATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	3 cut(s)	48, 217, 226
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	182, 336
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	182, 336, 406
Bsp143I	GATC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	263, 340
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	243, 276
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	264
BstPAI	GACNNNNGTC	2 cut(s)	8, 265
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	48, 217, 226
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	370
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	361
CviJI	RGCY	5 cut(s)	47, 140, 209, 230, 378
CviKI_1	RGCY	5 cut(s)	47, 140, 209, 230, 378
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	243, 276
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DraI	TTTAAA	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaiI	YATR	3 cut(s)	99, 301, 412
Fnu4HI	GCNGC	3 cut(s)	37, 215, 231
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	37, 215, 231
FspBI	CTAG	2 cut(s)	8, 384
GluI	GCNGC	3 cut(s)	37, 215, 231
GsaI	CCCAGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	47
HgaI	GACGC	1 cut(s)	222
HindIII	AAGCTT	2 cut(s)	138, 207
HinfI	GANTC	2 cut(s)	4, 241
Hpy188I	TCNGA	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	36, 91, 214, 303
HpyF3I	CTNAG	2 cut(s)	243, 276
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	185, 375
LpnPI	CCDG	6 cut(s)	143, 240, 249, 276, 295, 358
Lsp1109I	GCAGC	3 cut(s)	48, 217, 226
MaeI	CTAG	2 cut(s)	8, 384
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	2 cut(s)	114, 135
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	3 cut(s)	182, 336, 406
MluCI	AATT	2 cut(s)	100, 255
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	24, 82, 115, 136
MseI	TTAA	2 cut(s)	135, 248
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	38, 216, 232
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshAI	GACNNNNGTC	2 cut(s)	8, 265
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	344, 376
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	135, 248
SatI	GCNGC	3 cut(s)	37, 215, 231
Sau3AI	GATC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	3 cut(s)	182, 336, 406
SetI	ASST	8 cut(s)	142, 162, 201, 211, 232, 265, 277, 380
Sse9I	AATT	2 cut(s)	100, 255
SspMI	CTAG	2 cut(s)	8, 384
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	340
TasI	AATT	2 cut(s)	100, 255
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	135, 248
Tru9I	TTAA	2 cut(s)	135, 248
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	3 cut(s)	36, 214, 230
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	377
XspI	CTAG	2 cut(s)	8, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.