RLG00000010447

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001939
Physical Location & Seq
Forward (+)
1689255 .. 1701296
12042 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010447

Sequence Viewer

Length: 975 bp
ATGACTCTAGTCCCTCTGTTCGTGGGTTTAGGGTGCAGCAGATTGGCCTTCATCTCTGTTCGGGTTTTCTCCTCTCCCAACACAAAGTTGCAGACCCATAATTCCTCGCAAACCAATCTCTCTTCCTCTCACTTTAAAGCTTCTTCTTTTCTGCTTCAGGTGTCTGTCATTCAGTCGTGCTCCCAAAGTATCAATAAGGTGTTACAAGCTTTGCAGCAGAAGTTCCCAGCTGCGTCAAAGACTCAGTTAAGGATAATTAGACCTGGGTCTGAACCTAAGCGATACTCTATTATCCCTTTATGCAAGATCTGGTGGAGTAGCATGATAACAGAGCACATCCAAGGCATTTTGAACTCTTTGTACTCATTTCACTGGAGCTTGACTAGAGATTGGGAGTTGAGATACCATTTAGCTAAGAATGGGATGGCAGTGACTTATGAGACATGGACTGAACATGGAGAAACAAAGGCACCGCAAATGGATGTCGGTCAAGAGGAGCGTGGACCAAATGATGATGTGTTTGATATTTTGAATGATGTATTCCCACAAGAAAATCAAATGGATCAAGATTTAGAGGGGGATGATGATTCATTGGGAAGTAGTCAAGAACATGCTGAGGTGGACGATGGGTCCAATATGCATAGGGTAGAAGCTGATAAGATTAAATTTGTGAATCTCCATTGGTGCTTGAGCTTCCAAGACCTTGAAAATGTGTCTGCTATGAATAGGATTAGGAAATGGGGAACGATGCACGGGTTACACCACCTCATGCTTTTCAGGAATCAAATGAGTAATGAAGGGTTGTGTGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTTGATTTGCGACGGTGCTTGAATCTTACATTGGAGGGAGATGTGGGTAGAAGATGTGTCGAGCGAATTCAAAAGTTAAGGCTTCCCCTGGATTCCATCGAGGACATAGACCCCTCATACAATGTGGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

325

Amino Acids

36.96

Weight (kDa)

5.7

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cac1_C PF21796 54 - 84 8.1e-08 Chromatin assembly factor 1 subunit Cac1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AciI CCGC 1 cut(s) 473
AclWI GGATC 1 cut(s) 570
AcsI RAATTY 2 cut(s) 665, 906
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 5 cut(s) 352, 532, 707, 862, 911
AhdI GACNNNNNGTC 1 cut(s) 628
AjnI CCWGG 2 cut(s) 262, 927
AjuI GAANNNNNNNTTGG 2 cut(s) 854, 886
AluBI AGCT 7 cut(s) 140, 209, 230, 378, 413, 653, 693
AluI AGCT 7 cut(s) 140, 209, 230, 378, 413, 653, 693
Alw21I GWGCWC 2 cut(s) 182, 336
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 570
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 36, 214, 230
ApoI RAATTY 2 cut(s) 665, 906
AspS9I GGNCC 2 cut(s) 503, 630
AvaII GGWCC 2 cut(s) 503, 630
BanI GGYRCC 1 cut(s) 469
Bbv12I GWGCWC 2 cut(s) 182, 336
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 48, 217, 226
BccI CCATC 4 cut(s) 418, 620, 812, 944
BciT130I CCWGG 2 cut(s) 264, 929
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 2 cut(s) 8, 384
BglII AGATCT 1 cut(s) 306
BisI GCNGC 3 cut(s) 37, 215, 231
BlsI GCNGC 3 cut(s) 38, 216, 232
Bme1390I CCNGG 2 cut(s) 264, 929
Bme18I GGWCC 2 cut(s) 503, 630
BmeRI GACNNNNNGTC 1 cut(s) 628
BmgT120I GGNCC 2 cut(s) 503, 630
BmiI GGNNCC 2 cut(s) 471, 631
BmrFI CCNGG 2 cut(s) 264, 929
BmsI GCATC 1 cut(s) 738
BoxI GACNNNNGTC 2 cut(s) 8, 265
BpmI CTGGAG 1 cut(s) 394
Bpu10I CCTNAGC 2 cut(s) 276, 615
BpuEI CTTGAG 2 cut(s) 709, 854
BsaJI CCNNGG 3 cut(s) 263, 340, 927
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 2 cut(s) 264, 929
BseDI CCNNGG 3 cut(s) 263, 340, 927
BseGI GGATG 4 cut(s) 336, 429, 487, 586
BseMII CTCAG 2 cut(s) 257, 606
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 61, 509
BseXI GCAGC 3 cut(s) 48, 217, 226
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 469
BsiHKAI GWGCWC 2 cut(s) 182, 336
BsmAI GTCTC 1 cut(s) 434
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 182, 336
Bsp143I GATC 2 cut(s) 306, 562
BspACI CCGC 1 cut(s) 473
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 256, 607
BspLI GGNNCC 2 cut(s) 471, 631
BspPI GGATC 1 cut(s) 570
BspT107I GGYRCC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 263, 340, 927
BssMI GATC 2 cut(s) 306, 562
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 2 cut(s) 264, 929
Bst4CI ACNGT 1 cut(s) 855
Bst6I CTCTTC 1 cut(s) 127
BstDEI CTNAG 4 cut(s) 243, 276, 414, 615
BstF5I GGATG 4 cut(s) 336, 429, 487, 586
BstKTI GATC 2 cut(s) 309, 565
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 306, 562
BstNI CCWGG 2 cut(s) 264, 929
BstNSI RCATGY 1 cut(s) 614
BstPAI GACNNNNGTC 2 cut(s) 8, 265
BstSCI CCNGG 2 cut(s) 262, 927
BstV1I GCAGC 3 cut(s) 48, 217, 226
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 4 cut(s) 336, 429, 487, 586
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 2 cut(s) 370, 435
Cfr13I GGNCC 2 cut(s) 503, 630
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 361
CviAII CATG 5 cut(s) 322, 444, 455, 611, 769
CviJI RGCY 9 cut(s) 47, 140, 209, 230, 378, 413, 653, 693, 922
CviKI_1 RGCY 9 cut(s) 47, 140, 209, 230, 378, 413, 653, 693, 922
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 4 cut(s) 243, 276, 414, 615
DpnI GATC 2 cut(s) 308, 564
DpnII GATC 2 cut(s) 306, 562
DraI TTTAAA 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 628
Eam1104I CTCTTC 1 cut(s) 127
Eam1105I GACNNNNNGTC 1 cut(s) 628
EarI CTCTTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 503, 630
Eco57I CTGAAG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 906
EcoRII CCWGG 2 cut(s) 262, 927
EcoT14I CCWWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 5 cut(s) 325, 447, 458, 614, 772
FatI CATG 5 cut(s) 321, 443, 454, 610, 768
Fnu4HI GCNGC 3 cut(s) 37, 215, 231
FokI GGATG 4 cut(s) 323, 436, 494, 593
Fsp4HI GCNGC 3 cut(s) 37, 215, 231
FspBI CTAG 2 cut(s) 8, 384
GluI GCNGC 3 cut(s) 37, 215, 231
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 1 cut(s) 47
HgaI GACGC 1 cut(s) 222
Hin1II CATG 5 cut(s) 325, 447, 458, 614, 772
HindIII AAGCTT 2 cut(s) 138, 207
HinfI GANTC 8 cut(s) 4, 241, 587, 673, 781, 836, 862, 932
Hpy166II GTNNAC 2 cut(s) 503, 622
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 6 cut(s) 491, 566, 605, 778, 815, 833
Hpy8I GTNNAC 2 cut(s) 503, 622
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 2 cut(s) 58, 791
HpyCH4III ACNGT 1 cut(s) 855
HpyCH4V TGCA 7 cut(s) 36, 91, 214, 303, 640, 751, 809
HpyF3I CTNAG 4 cut(s) 243, 276, 414, 615
Hsp92II CATG 5 cut(s) 325, 447, 458, 614, 772
Kzo9I GATC 2 cut(s) 306, 562
LmnI GCTCC 3 cut(s) 185, 375, 496
LpnPI CCDG 9 cut(s) 143, 240, 249, 276, 295, 358, 763, 914, 941
Lsp1109I GCAGC 3 cut(s) 48, 217, 226
LweI GCATC 1 cut(s) 738
MaeI CTAG 2 cut(s) 8, 384
MaeIII GTNAC 4 cut(s) 201, 430, 756, 837
MalI GATC 2 cut(s) 308, 564
MboI GATC 2 cut(s) 306, 562
MboII GAAGA 3 cut(s) 114, 135, 903
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 182, 336
MluCI AATT 6 cut(s) 100, 255, 665, 810, 906, 970
MlyI GAGTC 2 cut(s) 235, 845
Mph1103I ATGCAT 1 cut(s) 642
MseI TTAA 5 cut(s) 135, 248, 663, 917, 973
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 264, 929
MvaI CCWGG 2 cut(s) 264, 929
NdeII GATC 2 cut(s) 306, 562
NlaIII CATG 5 cut(s) 325, 447, 458, 614, 772
NlaIV GGNNCC 2 cut(s) 471, 631
NmuCI GTSAC 2 cut(s) 430, 837
NsiI ATGCAT 1 cut(s) 642
NspI RCATGY 1 cut(s) 614
PfeI GAWTC 5 cut(s) 587, 673, 781, 862, 932
PkrI GCNGC 3 cut(s) 38, 216, 232
PleI GAGTC 2 cut(s) 235, 844
PpsI GAGTC 2 cut(s) 235, 844
PshAI GACNNNNGTC 2 cut(s) 8, 265
Psp6I CCWGG 2 cut(s) 262, 927
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 262, 927
PspN4I GGNNCC 2 cut(s) 471, 631
PspPI GGNCC 2 cut(s) 503, 630
PsrI GAACNNNNNNTAC 2 cut(s) 344, 376
PsuI RGATCY 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SaqAI TTAA 5 cut(s) 135, 248, 663, 917, 973
SatI GCNGC 3 cut(s) 37, 215, 231
Sau3AI GATC 2 cut(s) 306, 562
Sau96I GGNCC 2 cut(s) 503, 630
SchI GAGTC 2 cut(s) 235, 845
ScrFI CCNGG 2 cut(s) 264, 929
SduI GDGCHC 2 cut(s) 182, 336
SfaNI GCATC 1 cut(s) 738
SinI GGWCC 2 cut(s) 503, 630
SmlI CTYRAG 2 cut(s) 688, 833
SmoI CTYRAG 2 cut(s) 688, 833
Sse9I AATT 6 cut(s) 100, 255, 665, 810, 906, 970
SsiI CCGC 1 cut(s) 473
SspMI CTAG 2 cut(s) 8, 384
StyD4I CCNGG 2 cut(s) 262, 927
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 855
TaqI TCGA 2 cut(s) 900, 939
TaqII GACCGA 1 cut(s) 476
TasI AATT 6 cut(s) 100, 255, 665, 810, 906, 970
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 5 cut(s) 587, 673, 781, 862, 932
Tru1I TTAA 5 cut(s) 135, 248, 663, 917, 973
Tru9I TTAA 5 cut(s) 135, 248, 663, 917, 973
TscAI CASTG 2 cut(s) 377, 435
TseFI GTSAC 2 cut(s) 430, 837
TseI GCWGC 3 cut(s) 36, 214, 230
Tsp45I GTSAC 2 cut(s) 430, 837
TspDTI ATGAA 4 cut(s) 40, 579, 737, 810
TspRI CASTG 2 cut(s) 377, 435
VpaK11BI GGWCC 2 cut(s) 503, 630
XapI RAATTY 2 cut(s) 665, 906
XceI RCATGY 1 cut(s) 614
XspI CTAG 2 cut(s) 8, 384
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.