RchiOBHm_Chr2g0171631

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
85226754 .. 85233379
6626 bp
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UTR
Exon/CDS
Intron
PRQ53901

Sequence Viewer

Length: 249 bp
ATGGGGATGACCGAGACCGCGAAGACTGAAGTATGTGTGTTTATATGCATTCTGACGTATGAGTTGGCAGAAAATTTCCTCACAAATATACAAGGTCAGATGCTTAAGTATACTGAAAATCAGTTGTCATGTAAAACCATTGCATCATTTCAGGACAAAAGCTTATTGGAAATGTTGCATACACCATTCATTGAACTGCCAACATATGTGGCAAACATTCTCAATGTTTTTCCTATTCAAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.38

Weight (kDa)

4.88

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 110
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 48
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 194, 239
AluBI AGCT 2 cut(s) 162, 244
AluI AGCT 2 cut(s) 162, 244
Alw26I GTCTC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 104
BmsI GCATC 2 cut(s) 90, 152
BpiI GAAGAC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 138
BseGI GGATG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 8
BspACI CCGC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 20
BspTI CTTAAG 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 138
BssNAI GTATAC 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 8
BstUI CGCG 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 29
BstZ17I GTATAC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 12
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 1 cut(s) 129
CviJI RGCY 2 cut(s) 162, 244
CviKI_1 RGCY 2 cut(s) 162, 244
Eco31I GGTCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 50
FaeI CATG 1 cut(s) 132
FatI CATG 1 cut(s) 128
FauNDI CATATG 1 cut(s) 205
FblI GTMKAC 1 cut(s) 110
FokI GGATG 1 cut(s) 19
Hin1II CATG 1 cut(s) 132
HindIII AAGCTT 2 cut(s) 160, 242
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 54, 99
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 48, 143, 178
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 132
LpnPI CCDG 1 cut(s) 137
LweI GCATC 2 cut(s) 90, 152
MaeII ACGT 1 cut(s) 56
MboII GAAGA 1 cut(s) 34
MluCI AATT 1 cut(s) 73
MnlI CCTC 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 48
MvnI CGCG 1 cut(s) 20
NdeI CATATG 1 cut(s) 205
NlaIII CATG 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 50
PctI GAATGC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 105
SetI ASST 4 cut(s) 59, 97, 164, 246
SfaNI GCATC 2 cut(s) 90, 152
SgeI CNNG 5 cut(s) 25, 31, 104, 141, 164
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 73
SsiI CCGC 1 cut(s) 18
TaiI ACGT 1 cut(s) 59
TaqII GACCGA 1 cut(s) 26
TasI AATT 1 cut(s) 73
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 178
Vha464I CTTAAG 1 cut(s) 104
XapI RAATTY 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.