Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000978

Physical Location & Seq

Genomic Coordinates Forward (+)

41252566 .. 41255410

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G497800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAGTCTTCTAGAATTCCAATCAAAGCTATCGTTTCTCTATTTTGCTCTTATATGCTTTTGTCGCACATCACCACTTTGAGCCCTACCTTGGCTTTGGAAGACTGTGAGTTTCCAGCCATCTTTAACTTTGGAGATTCAAATTCAGATACTGGTGGATTGGCTGCATCCCTTTTGCCACCACCACCACCTTATGGGGAGACCTATTTTCATATGCCGGTTGGGAGATTCTCAGATGGCAGGCTCATAATCGATTTTCTTGCAAAGAGTCTTGGTCACCCCTTTCTAAGCGCATATCTGGATTCCCTTGGGACAAACTTCTCGTATGGTGCAAATTTTGCCACTGCATCTTCCACAATCAGATTGCCAGATAACATTATACCAGCTGGTGGATTTAGTCCCTTCTACCTCAATATTCAGTACATGCAGTTCATGCAACTAAAATCCAGATCACAACTCATTAGGCATCGAGGGGGAATATTTGCAAGTTTGATGCCCAAGGAGGAGTATTTCTCCAAAGCTTTATACACATTTGACATTGGACAGAATGACCTAGGAGAGGGGTTCTTTGGTAACTTGACTGTTCAAGAGGTCAATGCATCGGTTCCTGATATAATTAGTGGGCTCTCGGCAAATATTAAGAAAATATATGATTTGGGAGCGAGATCATTTTGGATCCACAACACTGGGCCAATTGGCTGTCTCCCTTATATCTTAGCCAATTTCCCAGCTCAAACGGATGAGGCTGGCTGTGCAAAGTCATATAATGAAGTAGCTCAGCATTTTAACCAGAAGCTGAAGGAAGCCACAGTTCAACTTAGGAAAGATCTACCTTTGGCTGCAATTACTTATGTGGACGTCTATTCAGTTAAATACTCTCTTTTCAAGGAACCCCAAAAATATGGGTTTGAGCTCCCACTTGTTGCTTGTTGGGTATGGTGGCAAGTACAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

319

Amino Acids

35.36

Weight (kDa)

5.87

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26880 FvH4_2g26900 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950
malus_domestica	MD15G1348800.v1.1 MD15G1348900.v1.1 MD15G1349000.v1.1
prunus_persica	Prupe.1G497400_v2.0.a1 Prupe.1G497400_v2.0.a1 Prupe.1G497500_v2.0.a1 Prupe.1G497700_v2.0.a1 Prupe.1G497800_v2.0.a1 Prupe.1G497900_v2.0.a1
pyrus_communis	pycom15g31220
rosa_chinensis	RchiOBHm_Chr6g0295731 RchiOBHm_Chr6g0295741 RchiOBHm_Chr6g0295771 RchiOBHm_Chr6g0295811
rosa_laevigata	RLG00000011766 RLG00000011768 RLG00000011769 RLG00000011770 RLG00000011771 RLG00000011782
rosa_multiflora	Rmu_sc0007986.1_g000005 Rmu_sc0010663.1_g000005 Rmu_sc0011343.1_g000001 Rmu_sc0011343.1_g000009 Rmu_sc0015327.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172160 Rroxscaffold_7G00172170
rosa_rugosa	Rorug06G0253900 Rorug06G0254000
rosa_samantha	Rh6AG367300 Rh6AG367400 Rh6AG367600 Rh6AG367900 Rh6AG368000 Rh6BG375100 Rh6BG375300 Rh6BG375600 Rh6CG381500 Rh6CG381600 Rh6CG381800 Rh6CG381900 Rh6DG368200 Rh6DG368300 Rh6DG368400
rosa_wichuraiana	Rw6G032060 Rw6G032070 Rw6G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	861
AccB7I	CCANNNNNTGG	2 cut(s)	194, 389
AclWI	GGATC	2 cut(s)	670, 683
AcsI	RAATTY	3 cut(s)	15, 142, 334
AcuI	CTGAAG	1 cut(s)	818
AcyI	GRCGYC	1 cut(s)	858
AfaI	GTAC	2 cut(s)	422, 948
AfiI	CCNNNNNNNGG	4 cut(s)	91, 194, 389, 559
AgsI	TTSAA	4 cut(s)	141, 587, 815, 886
AluBI	AGCT	7 cut(s)	29, 386, 521, 731, 776, 796, 913
AluI	AGCT	7 cut(s)	29, 386, 521, 731, 776, 796, 913
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	2 cut(s)	194, 707
AlwI	GGATC	2 cut(s)	670, 683
AlwNI	CAGNNNCTG	2 cut(s)	152, 796
AoxI	GGCC	1 cut(s)	689
ApeKI	GCWGC	2 cut(s)	164, 839
ApoI	RAATTY	3 cut(s)	15, 142, 334
AspA2I	CCTAGG	1 cut(s)	553
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	2 cut(s)	64, 269
AvrII	CCTAGG	1 cut(s)	553
BamHI	GGATCC	1 cut(s)	675
BanII	GRGCYC	3 cut(s)	86, 627, 915
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	915
BbvI	GCAGC	2 cut(s)	151, 826
BccI	CCATC	2 cut(s)	128, 230
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BcoDI	GTCTC	2 cut(s)	194, 707
BfaI	CTAG	2 cut(s)	12, 554
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	2 cut(s)	165, 840
BlnI	CCTAGG	1 cut(s)	553
BlpI	GCTNAGC	1 cut(s)	777
BlsI	GCNGC	2 cut(s)	166, 841
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	3 cut(s)	606, 677, 891
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	5 cut(s)	176, 356, 475, 483, 608
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
Bpu1102I	GCTNAGC	1 cut(s)	777
Bsa29I	ATCGAT	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	90, 307, 498, 553
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 194, 389, 559
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	157, 691
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	4 cut(s)	90, 307, 498, 553
BseGI	GGATG	2 cut(s)	167, 745
BseLI	CCNNNNNNNGG	4 cut(s)	91, 194, 389, 559
BseMII	CTCAG	2 cut(s)	246, 791
BseNI	ACTGG	2 cut(s)	157, 691
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	151, 826
BseYI	CCCAGC	1 cut(s)	727
BshFI	GGCC	1 cut(s)	691
BshVI	ATCGAT	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	915
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	325, 384
BslI	CCNNNNNNNGG	4 cut(s)	91, 194, 389, 559
BsmAI	GTCTC	2 cut(s)	194, 707
BsmFI	GGGAC	2 cut(s)	325, 384
BsnI	GGCC	1 cut(s)	691
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	86, 627, 915
Bsp143I	GATC	4 cut(s)	449, 665, 675, 826
Bsp1720I	GCTNAGC	1 cut(s)	777
BspANI	GGCC	1 cut(s)	691
BspCNI	CTCAG	2 cut(s)	245, 790
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	606, 677, 891
BspPI	GGATC	2 cut(s)	670, 683
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	157, 691
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	4 cut(s)	90, 307, 498, 553
BssMI	GATC	4 cut(s)	449, 665, 675, 826
BssNI	GRCGYC	1 cut(s)	858
BssT1I	CCWWGG	4 cut(s)	90, 307, 498, 553
Bst4CI	ACNGT	3 cut(s)	107, 583, 811
BstACI	GRCGYC	1 cut(s)	858
BstAPI	GCANNNNNTGC	2 cut(s)	338, 433
BstC8I	GCNNGC	2 cut(s)	242, 748
BstDEI	CTNAG	5 cut(s)	232, 287, 715, 777, 818
BstEII	GGTNACC	1 cut(s)	275
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	2 cut(s)	167, 745
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	452, 668, 678, 829
BstMAI	GTCTC	2 cut(s)	194, 707
BstMBI	GATC	4 cut(s)	449, 665, 675, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 338, 433, 752
BstNSI	RCATGY	1 cut(s)	427
BstPI	GGTNACC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	151, 826
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	675, 826
BstXI	CCANNNNNNTGG	2 cut(s)	686, 902
BstYI	RGATCY	2 cut(s)	675, 826
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	691
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	167, 745
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 684
Cac8I	GCNNGC	2 cut(s)	242, 748
CaiI	CAGNNNCTG	2 cut(s)	152, 796
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	421, 947
CviAII	CATG	2 cut(s)	424, 433
CviQI	GTAC	2 cut(s)	421, 947
DdeI	CTNAG	5 cut(s)	232, 287, 715, 777, 818
DpnI	GATC	4 cut(s)	451, 667, 677, 828
DpnII	GATC	4 cut(s)	449, 665, 675, 826
Ecl136II	GAGCTC	1 cut(s)	913
Eco130I	CCWWGG	4 cut(s)	90, 307, 498, 553
Eco24I	GRGCYC	3 cut(s)	86, 627, 915
Eco31I	GGTCTC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	818
Eco91I	GGTNACC	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	15
EcoT14I	CCWWGG	4 cut(s)	90, 307, 498, 553
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	3 cut(s)	86, 627, 915
ErhI	CCWWGG	4 cut(s)	90, 307, 498, 553
FaeI	CATG	2 cut(s)	427, 436
FaqI	GGGAC	2 cut(s)	325, 384
FatI	CATG	2 cut(s)	423, 432
FauNDI	CATATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	165, 840
FokI	GGATG	2 cut(s)	154, 752
FriOI	GRGCYC	3 cut(s)	86, 627, 915
Fsp4HI	GCNGC	2 cut(s)	165, 840
FspBI	CTAG	2 cut(s)	12, 554
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	2 cut(s)	165, 840
GsaI	CCCAGC	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	691
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	858
Hin1II	CATG	2 cut(s)	427, 436
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	5 cut(s)	5, 137, 228, 268, 302
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	64, 269
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	3 cut(s)	148, 235, 362
Hpy188III	TCNNGA	5 cut(s)	12, 299, 447, 587, 608
Hpy8I	GTNNAC	1 cut(s)	856
HpyAV	CCTTC	2 cut(s)	412, 793
HpyCH4III	ACNGT	3 cut(s)	107, 583, 811
HpyCH4IV	ACGT	1 cut(s)	858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 338, 433, 752
HpyF3I	CTNAG	5 cut(s)	232, 287, 715, 777, 818
HpySE526I	ACGT	1 cut(s)	858
Hsp92I	GRCGYC	1 cut(s)	858
Hsp92II	CATG	2 cut(s)	427, 436
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	449, 665, 675, 826
LmnI	GCTCC	2 cut(s)	659, 918
Lsp1109I	GCAGC	2 cut(s)	151, 826
LweI	GCATC	5 cut(s)	176, 356, 475, 483, 608
MaeI	CTAG	2 cut(s)	12, 554
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	2 cut(s)	275, 572
MalI	GATC	4 cut(s)	451, 667, 677, 828
MboI	GATC	4 cut(s)	449, 665, 675, 826
MboII	GAAGA	2 cut(s)	113, 342
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	2 cut(s)	675, 826
MhlI	GDGCHC	3 cut(s)	86, 627, 915
MluCI	AATT	7 cut(s)	15, 142, 334, 615, 693, 721, 843
MlyI	GAGTC	2 cut(s)	14, 277
MnlI	CCTC	6 cut(s)	419, 464, 496, 553, 583, 736
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	4 cut(s)	126, 639, 786, 870
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	693
MwoI	GCNNNNNNNGC	4 cut(s)	64, 338, 433, 752
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	4 cut(s)	449, 665, 675, 826
NlaIII	CATG	2 cut(s)	427, 436
NlaIV	GGNNCC	3 cut(s)	606, 677, 891
NmeAIII	GCCGAG	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	137, 228, 302
PflMI	CCANNNNNTGG	2 cut(s)	194, 389
PkrI	GCNGC	2 cut(s)	166, 841
PleI	GAGTC	2 cut(s)	13, 276
PpsI	GAGTC	2 cut(s)	13, 276
Psp124BI	GAGCTC	1 cut(s)	915
PspEI	GGTNACC	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	727
PspN4I	GGNNCC	3 cut(s)	606, 677, 891
PspPI	GGNCC	1 cut(s)	689
PsrI	GAACNNNNNNTAC	2 cut(s)	413, 445
PstNI	CAGNNNCTG	2 cut(s)	152, 796
PsuI	RGATCY	2 cut(s)	675, 826
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	422, 948
RsaNI	GTAC	2 cut(s)	421, 947
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	4 cut(s)	126, 639, 786, 870
SatI	GCNGC	2 cut(s)	165, 840
Sau3AI	GATC	4 cut(s)	449, 665, 675, 826
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	2 cut(s)	14, 277
SduI	GDGCHC	3 cut(s)	86, 627, 915
SfaNI	GCATC	5 cut(s)	176, 356, 475, 483, 608
Sse9I	AATT	7 cut(s)	15, 142, 334, 615, 693, 721, 843
SspI	AATATT	3 cut(s)	415, 480, 637
SspMI	CTAG	2 cut(s)	12, 554
SstI	GAGCTC	1 cut(s)	915
StyI	CCWWGG	4 cut(s)	90, 307, 498, 553
TaaI	ACNGT	3 cut(s)	107, 583, 811
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	2 cut(s)	252, 469
TasI	AATT	7 cut(s)	15, 142, 334, 615, 693, 721, 843
TatI	WGTACW	2 cut(s)	420, 946
TfiI	GAWTC	3 cut(s)	137, 228, 302
Tru1I	TTAA	4 cut(s)	126, 639, 786, 870
Tru9I	TTAA	4 cut(s)	126, 639, 786, 870
TscAI	CASTG	2 cut(s)	349, 691
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	164, 839
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	200, 421, 783
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	2 cut(s)	349, 691
Van91I	CCANNNNNTGG	2 cut(s)	194, 389
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	3 cut(s)	15, 142, 334
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	1 cut(s)	427
XmaJI	CCTAGG	1 cut(s)	553
XspI	CTAG	2 cut(s)	12, 554
ZraI	GACGTC	1 cut(s)	859
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.