Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000978

Physical Location & Seq

Genomic Coordinates Reverse (-)

60477817 .. 60480150

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG375600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGGTACTCTCCTAAAGTTATCATTTCTCTGTTCTGCTCCTATATGCTTATATTGCATATTACCAGTAGTGCTGTGATCCCTACCTTAGCTTTGAAAGACTGTGAGTTTCCTGCCATCTTCAACTTCGGAGACTCAAATTCAGATACTGGTGGACTAGCCGCAACCCTTCTTTTAACACCAACCACACCTTATGGAGAGACCTATTTCCATATGCCGGCCGGAAGATTCTCTGATGGAAGACTCATCATCGATTTCCTTGGATTTGAGCTCCCACTTGTTGCTTGTTGTGGCTCCGGTGGTAAGTACAACTATAACGCCACTGCTGGATGTGGAGCAATAATTACAGTTAATGGAAGCCAAATCCTTGTTGGTTCATGCAAAAACCCCTCAATTAGAGTGAACTGGGATGGTATTCATTACACCGAGGCAGCTGCGAAATTTGTTTTTGATAAACTTTCAACTGGAGCGTATTCAGATCCACCTCTTCCCTTGAAACAAGCATGTCACAGGAGTTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

174

Amino Acids

18.6

Weight (kDa)

6.38

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26880 FvH4_2g26900 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950
malus_domestica	MD15G1348800.v1.1 MD15G1348900.v1.1 MD15G1349000.v1.1
prunus_persica	Prupe.1G497400_v2.0.a1 Prupe.1G497400_v2.0.a1 Prupe.1G497500_v2.0.a1 Prupe.1G497700_v2.0.a1 Prupe.1G497800_v2.0.a1 Prupe.1G497900_v2.0.a1
pyrus_communis	pycom15g31220
rosa_chinensis	RchiOBHm_Chr6g0295731 RchiOBHm_Chr6g0295741 RchiOBHm_Chr6g0295771 RchiOBHm_Chr6g0295811
rosa_laevigata	RLG00000011766 RLG00000011768 RLG00000011769 RLG00000011770 RLG00000011771 RLG00000011782
rosa_multiflora	Rmu_sc0007986.1_g000005 Rmu_sc0010663.1_g000005 Rmu_sc0011343.1_g000001 Rmu_sc0011343.1_g000009 Rmu_sc0015327.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172160 Rroxscaffold_7G00172170
rosa_rugosa	Rorug06G0253900 Rorug06G0254000
rosa_samantha	Rh6AG367300 Rh6AG367400 Rh6AG367600 Rh6AG367900 Rh6AG368000 Rh6BG375100 Rh6BG375300 Rh6BG375600 Rh6CG381500 Rh6CG381600 Rh6CG381800 Rh6CG381900 Rh6DG368200 Rh6DG368300 Rh6DG368400
rosa_wichuraiana	Rw6G032060 Rw6G032070 Rw6G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	73, 473
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	139, 440
AfaI	GTAC	2 cut(s)	8, 308
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	5 cut(s)	97, 124, 462, 496, 520
AluBI	AGCT	3 cut(s)	92, 271, 434
AluI	AGCT	3 cut(s)	92, 271, 434
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	126, 194
AlwI	GGATC	2 cut(s)	73, 473
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	431, 434
ApoI	RAATTY	2 cut(s)	139, 440
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	421, 443
BccI	CCATC	3 cut(s)	125, 230, 404
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BcoDI	GTCTC	2 cut(s)	126, 194
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	3 cut(s)	162, 432, 435
BlsI	GCNGC	3 cut(s)	163, 433, 436
BmiI	GGNNCC	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	88
Bsa29I	ATCGAT	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	259, 426
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	4 cut(s)	66, 154, 410, 469
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	259, 426
BseGI	GGATG	2 cut(s)	335, 415
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	4 cut(s)	66, 154, 410, 469
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	421, 443
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	218, 222, 297
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	126, 194
BsnI	GGCC	1 cut(s)	221
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	78, 478
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	221
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	73, 473
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	4 cut(s)	66, 154, 410, 469
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	259, 426
BssMI	GATC	2 cut(s)	78, 478
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	104, 349
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	335, 415
BstKTI	GATC	2 cut(s)	81, 481
BstMAI	GTCTC	2 cut(s)	126, 194
BstMBI	GATC	2 cut(s)	78, 478
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	421, 443
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BstZI	CGGCCG	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	221
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	335, 415
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	7, 307
CviAII	CATG	2 cut(s)	378, 504
CviJI	RGCY	7 cut(s)	92, 161, 221, 271, 294, 360, 434
CviKI_1	RGCY	7 cut(s)	92, 161, 221, 271, 294, 360, 434
CviQI	GTAC	2 cut(s)	7, 307
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	80, 480
DpnII	GATC	2 cut(s)	78, 478
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	381, 507
FatI	CATG	2 cut(s)	377, 503
FauNDI	CATATG	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	162, 432, 435
FokI	GGATG	2 cut(s)	342, 422
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	162, 432, 435
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	3 cut(s)	162, 432, 435
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	3 cut(s)	218, 222, 297
Hin1II	CATG	2 cut(s)	381, 507
HinfI	GANTC	3 cut(s)	134, 228, 243
HpaII	CCGG	3 cut(s)	218, 222, 297
Hpy166II	GTNNAC	2 cut(s)	155, 403
Hpy188I	TCNGA	4 cut(s)	131, 145, 235, 478
Hpy8I	GTNNAC	2 cut(s)	155, 403
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	104, 349
HpyCH4V	TGCA	2 cut(s)	58, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	381, 507
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	78, 478
LmnI	GCTCC	5 cut(s)	44, 276, 299, 335, 467
Lsp1109I	GCAGC	2 cut(s)	421, 443
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	2 cut(s)	80, 480
MboI	GATC	2 cut(s)	78, 478
MboII	GAAGA	4 cut(s)	112, 237, 252, 479
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	139, 342, 393, 440
MlyI	GAGTC	2 cut(s)	128, 237
MnlI	CCTC	3 cut(s)	400, 421, 495
MroNI	GCCGGC	1 cut(s)	217
MseI	TTAA	2 cut(s)	176, 351
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	3 cut(s)	218, 222, 297
MwoI	GCNNNNNNNGC	1 cut(s)	55
NaeI	GCCGGC	1 cut(s)	219
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	2 cut(s)	78, 478
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	381, 507
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	506
NspI	RCATGY	1 cut(s)	507
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	163, 433, 436
PleI	GAGTC	2 cut(s)	128, 237
PpsI	GAGTC	2 cut(s)	128, 237
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	8, 308
RsaNI	GTAC	2 cut(s)	7, 307
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	176, 351
SatI	GCNGC	3 cut(s)	162, 432, 435
Sau3AI	GATC	2 cut(s)	78, 478
SchI	GAGTC	2 cut(s)	128, 237
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	7 cut(s)	89, 94, 193, 206, 273, 436, 487
Sse9I	AATT	4 cut(s)	139, 342, 393, 440
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	104, 349
TaqI	TCGA	1 cut(s)	252
TasI	AATT	4 cut(s)	139, 342, 393, 440
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	176, 351
Tru9I	TTAA	2 cut(s)	176, 351
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	2 cut(s)	431, 434
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	2 cut(s)	366, 407
TspRI	CASTG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	139, 440
XceI	RCATGY	1 cut(s)	507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.