Rh6CG381800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000978
Physical Location & Seq
Reverse (-)
56825766 .. 56827249
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG381800.1

Sequence Viewer

Length: 429 bp
ATGAATAATCGGCGTCATCATCAAACAATTTCCACTTGGAGTCTACGAAGCTCAGCACGCTCTCTGTCTGTCTCGACTTGCAGAGACAAAAGAAACAGAAGGAACAGCATATCCCTTTCGTCTTCTCCCTCTCTCCACCTCTCTCTCTCTCTCTCACTCTATCTTCCTGCAGATCAAAGAAGCAAACACGCAGAGGTAAATCAACACCACTCGGCGCGAAAGGTTGCGGACACCATCGAATGGCCAGGCTGTAAATTATTCCAGCACCCGCAATATAAAACAAACACAGCTTGGTTCTCATCTGCATCTTTTGATGAGAAATCCACCATACAGTACTCTCCTGAAGTTATTATTTCTCTGTTCTGCTCCTATATGCTTATATTGCATATTACCAGTAGTACTCACCCTACCTTGGCTTTGGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.2

Weight (kDa)

9.55

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccI GTMKAC 1 cut(s) 43
AccII CGCG 1 cut(s) 217
AciI CCGC 2 cut(s) 227, 269
AcoI YGGCCR 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 2 cut(s) 335, 400
AfiI CCNNNNNNNGG 2 cut(s) 240, 412
AjnI CCWGG 1 cut(s) 244
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 51, 290
AluI AGCT 2 cut(s) 51, 290
Alw26I GTCTC 2 cut(s) 76, 78
AoxI GGCC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 395
BalI TGGCCA 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 76, 78
BfmI CTRYAG 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 52
BmcAI AGTACT 2 cut(s) 335, 400
Bme1390I CCNGG 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 412
Bse1I ACTGG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 240, 412
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 240, 412
BsmAI GTCTC 2 cut(s) 76, 78
BsnI GGCC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 52
BspACI CCGC 2 cut(s) 227, 269
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 65
BspFNI CGCG 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 2 cut(s) 76, 78
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 57, 382
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 217
CseI GACGC 1 cut(s) 2
Csp6I GTAC 2 cut(s) 334, 399
CviJI RGCY 5 cut(s) 51, 244, 249, 290, 416
CviKI_1 RGCY 5 cut(s) 51, 244, 249, 290, 416
CviQI GTAC 2 cut(s) 334, 399
DdeI CTNAG 1 cut(s) 52
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaiI YATR 7 cut(s) 110, 276, 329, 372, 374, 380, 387
FauI CCCGC 1 cut(s) 276
FblI GTMKAC 1 cut(s) 43
GlaI GCGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 244
HgaI GACGC 1 cut(s) 2
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 13
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 1 cut(s) 40
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 73, 341
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 81, 170, 305, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 382
HpyF3I CTNAG 1 cut(s) 52
Hsp92I GRCGYC 1 cut(s) 13
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 6 cut(s) 180, 231, 258, 275, 354, 406
LweI GCATC 1 cut(s) 314
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 114, 155
MlsI TGGCCA 1 cut(s) 244
MluCI AATT 2 cut(s) 27, 254
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 3 cut(s) 139, 149, 187
Mox20I TGGCCA 1 cut(s) 244
MscI TGGCCA 1 cut(s) 244
Msp20I TGGCCA 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 57, 382
NdeII GATC 1 cut(s) 172
NmeAIII GCCGAG 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 240
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PstI CTGCAG 1 cut(s) 172
RsaI GTAC 2 cut(s) 335, 400
RsaNI GTAC 2 cut(s) 334, 399
Sau3AI GATC 1 cut(s) 172
ScaI AGTACT 2 cut(s) 335, 400
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 246
SetI ASST 6 cut(s) 53, 141, 198, 225, 292, 413
SfaNI GCATC 1 cut(s) 314
SfcI CTRYAG 1 cut(s) 168
Sse9I AATT 2 cut(s) 27, 254
SsiI CCGC 2 cut(s) 227, 269
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 74, 237
TasI AATT 2 cut(s) 27, 254
TatI WGTACW 2 cut(s) 333, 398
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 43
ZrmI AGTACT 2 cut(s) 335, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.