Rmu_sc0011343.1_g000009

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011343.1
OG0000978
Physical Location & Seq
Forward (+)
27306 .. 27949
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011343.1_g000009.1.cds

Sequence Viewer

Length: 456 bp
atgcccaaggaggagtacttctctaaagcattatacacattcgacattggtcagaatgatcttagcgagggatttacccgcggtaacatgactatacaggaagtcaatgcatctgtaactgatataatcactggtttctcaacttatatcaagaaaatatatgatttgggagcaagatcaatatggatccacaatacggggccgattggctgtctcccttacattgtggcagacttcccatcagctcagaaagatgagattggctgtgcaaaagcttacaatgaagtagctcaacattttaaccacgagctgaagctggccatagttcaactcaggaaggattttcctttggctgcattcacttatgtagatgtgtattatgtcgtcaaatactctcttttcaaggaacctgaaaagtatggtaagtcgatattgaagcattataaatcctcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

151

Amino Acids

17.23

Weight (kDa)

6.9

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccII CGCG 1 cut(s) 81
AciI CCGC 2 cut(s) 79, 81
AclWI GGATC 2 cut(s) 181, 194
AcoI YGGCCR 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 329, 403, 436
AluBI AGCT 5 cut(s) 245, 275, 290, 310, 316
AluI AGCT 5 cut(s) 245, 275, 290, 310, 316
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 2 cut(s) 181, 194
AoxI GGCC 2 cut(s) 200, 318
ApeKI GCWGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 320
BamHI GGATCC 1 cut(s) 186
BauI CACGAG 1 cut(s) 305
BbvI GCAGC 1 cut(s) 340
BccI CCATC 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 218
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
BmcAI AGTACT 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 3 cut(s) 188, 201, 408
BmsI GCATC 1 cut(s) 119
BoxI GACNNNNGTC 1 cut(s) 48
BplI GAGNNNNNCTC 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 6, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 6, 79
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 260, 346
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 202, 320
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 2 cut(s) 202, 320
Bsp143I GATC 3 cut(s) 58, 176, 186
BspACI CCGC 2 cut(s) 79, 81
BspANI GGCC 2 cut(s) 202, 320
BspCNI CTCAG 2 cut(s) 259, 345
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 3 cut(s) 188, 201, 408
BspPI GGATC 2 cut(s) 181, 194
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 6, 79
BssMI GATC 3 cut(s) 58, 176, 186
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 62, 246, 332
BstDSI CCRYGG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 3 cut(s) 61, 179, 189
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 58, 176, 186
BstPAI GACNNNNGTC 1 cut(s) 48
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 2 cut(s) 202, 320
BtgI CCRYGG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 200
Cfr42I CCGCGG 1 cut(s) 82
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 88
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 3 cut(s) 62, 246, 332
DpnI GATC 3 cut(s) 60, 178, 188
DpnII GATC 3 cut(s) 58, 176, 186
EaeI YGGCCR 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 91
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 2 cut(s) 202, 320
Hin1II CATG 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 54, 249
Hpy188III TCNNGA 2 cut(s) 151, 334
HpyAV CCTTC 1 cut(s) 331
HpyCH4V TGCA 3 cut(s) 110, 269, 356
HpyF3I CTNAG 3 cut(s) 62, 246, 332
Hsp92II CATG 1 cut(s) 91
KspI CCGCGG 1 cut(s) 82
Kzo9I GATC 3 cut(s) 58, 176, 186
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 5 cut(s) 83, 117, 302, 319, 423
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 83, 115
MalI GATC 3 cut(s) 60, 178, 188
MboI GATC 3 cut(s) 58, 176, 186
MflI RGATCY 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 320
MluNI TGGCCA 1 cut(s) 320
MnlI CCTC 2 cut(s) 4, 61
Mox20I TGGCCA 1 cut(s) 320
Mph1103I ATGCAT 1 cut(s) 112
MscI TGGCCA 1 cut(s) 320
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 356
MvnI CGCG 1 cut(s) 81
NdeII GATC 3 cut(s) 58, 176, 186
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 3 cut(s) 188, 201, 408
NsiI ATGCAT 1 cut(s) 112
PctI GAATGC 1 cut(s) 356
PkrI GCNGC 1 cut(s) 355
PshAI GACNNNNGTC 1 cut(s) 48
PsiI TTATAA 1 cut(s) 444
PspN4I GGNNCC 3 cut(s) 188, 201, 408
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SacII CCGCGG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 3 cut(s) 58, 176, 186
Sau96I GGNCC 1 cut(s) 200
ScaI AGTACT 1 cut(s) 17
SetI ASST 6 cut(s) 247, 277, 292, 312, 318, 412
SfaNI GCATC 1 cut(s) 119
Sfr303I CCGCGG 1 cut(s) 82
SgrBI CCGCGG 1 cut(s) 82
SsiI CCGC 2 cut(s) 79, 81
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 2 cut(s) 42, 428
TatI WGTACW 1 cut(s) 15
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.