Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000978

Physical Location & Seq

Genomic Coordinates Reverse (-)

57677089 .. 57679216

Gene Structure 2128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGTACTCTCCGAAAGTTATTATTTCTCTGTTCTGCTGCTATATGCTTATATTGCATATTACCAGTAGTACCTTGGCTTTGAAAGACTGCGAGTTTCCAGCCATCTTCAACTTCGGAGACTCAAATTCAGATACTGGTGGATTAGCCGCATCCCTTCTATTAACACCAACCACACCTTATGGAGAGACCTATTTCCATATGCCGGTCGGAAGACTCTCTGATGGAAGACTCATTATCGACTTCCTTGCAAAGAGTCTTGGTCACCCTTATCTAAGCGCATATCTGGATTCTCTCGGGACAAATTTCTCGCATGGTGCAAATTTCGCCACTGCAGCTTCCACTATCAGACTCCCAGATCTCATTTTACCAGCCGGTCAATTTAGTCCCTTCTACCTTGATATTCAATATATGCAGTTCCTGCAACTAAAATCCAGATCACAACTAATAAGGCATCGAGGGGAAGTATTTGCAAGTCTAATGCCCAAGGAGGAGTACTTCTCTAAAGCATTATACACATTCGACATTGGTCAGAATGATCTTAGCGAGGGATTTACCCGCGGTAACATGACTATACAGGAAGTCAATGCATCTGTAACTGATATAATCACTGGTTTCTCAACTTATATCAAGATGAATATGGATCCACAATACGGGGCGATTTGCTGTCTCCCTTACATTGTGGCAGACTTCCCATCAGCTCAGAAAGATGAGATTGGCTGTGCAAAAGCTTACAATGAAGTAGCGCAACATTTTAACCACGAGCTGAAGCTGGCCATAGTTCAACTCAGGAAGGATTTTCCTTTGGCTGCATTCACTAATGTAGATGTGTATTATGTCAAATACTCTCTTTTCAAGGAACCTGAAAAGTATGGATTTGAGCTCCCACTTGTTGCTTGCTGCGGTTATGGTGGTAAGTACAACTATAACAATACCGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

314

Amino Acids

35.15

Weight (kDa)

5.64

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 305	8.6e-31	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26880 FvH4_2g26900 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950
malus_domestica	MD15G1348800.v1.1 MD15G1348900.v1.1 MD15G1349000.v1.1
prunus_persica	Prupe.1G497400_v2.0.a1 Prupe.1G497400_v2.0.a1 Prupe.1G497500_v2.0.a1 Prupe.1G497700_v2.0.a1 Prupe.1G497800_v2.0.a1 Prupe.1G497900_v2.0.a1
pyrus_communis	pycom15g31220
rosa_chinensis	RchiOBHm_Chr6g0295731 RchiOBHm_Chr6g0295741 RchiOBHm_Chr6g0295771 RchiOBHm_Chr6g0295811
rosa_laevigata	RLG00000011766 RLG00000011768 RLG00000011769 RLG00000011770 RLG00000011771 RLG00000011782
rosa_multiflora	Rmu_sc0007986.1_g000005 Rmu_sc0010663.1_g000005 Rmu_sc0011343.1_g000001 Rmu_sc0011343.1_g000009 Rmu_sc0015327.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172160 Rroxscaffold_7G00172170
rosa_rugosa	Rorug06G0253900 Rorug06G0254000
rosa_samantha	Rh6AG367300 Rh6AG367400 Rh6AG367600 Rh6AG367900 Rh6AG368000 Rh6BG375100 Rh6BG375300 Rh6BG375600 Rh6CG381500 Rh6CG381600 Rh6CG381800 Rh6CG381900 Rh6DG368200 Rh6DG368300 Rh6DG368400
rosa_wichuraiana	Rw6G032060 Rw6G032070 Rw6G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	938
AccII	CGCG	1 cut(s)	561
AciI	CCGC	5 cut(s)	150, 559, 561, 903, 936
AclWI	GGATC	2 cut(s)	638, 651
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	3 cut(s)	127, 304, 322
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	4 cut(s)	8, 73, 497, 920
AfiI	CCNNNNNNNGG	2 cut(s)	205, 653
AgsI	TTSAA	5 cut(s)	85, 112, 407, 785, 856
AluBI	AGCT	6 cut(s)	338, 701, 731, 766, 772, 883
AluI	AGCT	6 cut(s)	338, 701, 731, 766, 772, 883
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	3 cut(s)	114, 182, 674
AlwI	GGATC	2 cut(s)	638, 651
AlwNI	CAGNNNCTG	2 cut(s)	137, 421
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	774
ApeKI	GCWGC	4 cut(s)	39, 335, 809, 900
ApoI	RAATTY	3 cut(s)	127, 304, 322
AspLEI	GCGC	2 cut(s)	281, 748
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	776
BamHI	GGATCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	885
BauI	CACGAG	1 cut(s)	761
BbsI	GAAGAC	2 cut(s)	220, 235
Bbv12I	GWGCWC	1 cut(s)	885
BbvI	GCAGC	4 cut(s)	26, 347, 796, 887
BccI	CCATC	3 cut(s)	113, 218, 703
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcoDI	GTCTC	3 cut(s)	114, 182, 674
BfmI	CTRYAG	1 cut(s)	333
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	5 cut(s)	40, 150, 336, 810, 901
BlsI	GCNGC	5 cut(s)	41, 151, 337, 811, 902
BmcAI	AGTACT	2 cut(s)	8, 497
BmeT110I	CYCGRG	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	645, 861
BmsI	GCATC	3 cut(s)	161, 463, 599
BoxI	GACNNNNGTC	1 cut(s)	528
BpiI	GAAGAC	2 cut(s)	220, 235
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	75, 486, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 653
Bse118I	RCCGGY	2 cut(s)	205, 374
Bse1I	ACTGG	3 cut(s)	66, 142, 616
BseDI	CCNNGG	3 cut(s)	75, 486, 559
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	205, 653
BseMII	CTCAG	2 cut(s)	716, 802
BseNI	ACTGG	3 cut(s)	66, 142, 616
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	26, 347, 796, 887
Bsh1236I	CGCG	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	776
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	885
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	206, 375
BslFI	GGGAC	2 cut(s)	313, 372
BslI	CCNNNNNNNGG	2 cut(s)	205, 653
BsmAI	GTCTC	3 cut(s)	114, 182, 674
BsmFI	GGGAC	2 cut(s)	313, 372
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	1 cut(s)	776
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp143I	GATC	4 cut(s)	358, 437, 538, 643
BspACI	CCGC	5 cut(s)	150, 559, 561, 903, 936
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	2 cut(s)	715, 801
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	645, 861
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	2 cut(s)	638, 651
BspTNI	GGTCTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	938
BsrFI	RCCGGY	2 cut(s)	205, 374
BsrI	ACTGG	3 cut(s)	66, 142, 616
BssAI	RCCGGY	2 cut(s)	205, 374
BssECI	CCNNGG	3 cut(s)	75, 486, 559
BssMI	GATC	4 cut(s)	358, 437, 538, 643
BssSI	CACGAG	1 cut(s)	761
BssT1I	CCWWGG	2 cut(s)	75, 486
Bst2BI	CACGAG	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	774, 898
BstDEI	CTNAG	4 cut(s)	275, 542, 702, 788
BstDSI	CCRYGG	1 cut(s)	559
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	281, 748
BstKTI	GATC	4 cut(s)	361, 440, 541, 646
BstMAI	GTCTC	3 cut(s)	114, 182, 674
BstMBI	GATC	4 cut(s)	358, 437, 538, 643
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 326, 335, 421
BstPAI	GACNNNNGTC	1 cut(s)	528
BstPI	GGTNACC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	26, 347, 796, 887
BstV2I	GAAGAC	2 cut(s)	220, 235
BstX2I	RGATCY	2 cut(s)	358, 643
BstYI	RGATCY	2 cut(s)	358, 643
BsuRI	GGCC	1 cut(s)	776
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	330, 609
Cac8I	GCNNGC	2 cut(s)	774, 898
CaiI	CAGNNNCTG	2 cut(s)	137, 421
CfoI	GCGC	2 cut(s)	281, 748
Cfr10I	RCCGGY	2 cut(s)	205, 374
Cfr42I	CCGCGG	1 cut(s)	562
Csp6I	GTAC	4 cut(s)	7, 72, 496, 919
CviAII	CATG	2 cut(s)	314, 568
CviQI	GTAC	4 cut(s)	7, 72, 496, 919
DdeI	CTNAG	4 cut(s)	275, 542, 702, 788
DpnI	GATC	4 cut(s)	360, 439, 540, 645
DpnII	GATC	4 cut(s)	358, 437, 538, 643
EaeI	YGGCCR	1 cut(s)	774
Ecl136II	GAGCTC	1 cut(s)	883
Eco130I	CCWWGG	2 cut(s)	75, 486
Eco24I	GRGCYC	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	883
EcoO65I	GGTNACC	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	75, 486
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	885
ErhI	CCWWGG	2 cut(s)	75, 486
FaeI	CATG	2 cut(s)	317, 571
FaqI	GGGAC	2 cut(s)	313, 372
FatI	CATG	2 cut(s)	313, 567
FauI	CCCGC	1 cut(s)	566
FauNDI	CATATG	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	40, 150, 336, 810, 901
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	885
Fsp4HI	GCNGC	5 cut(s)	40, 150, 336, 810, 901
GlaI	GCGC	2 cut(s)	280, 747
GluI	GCNGC	5 cut(s)	40, 150, 336, 810, 901
HaeIII	GGCC	1 cut(s)	776
HapII	CCGG	2 cut(s)	206, 375
HhaI	GCGC	2 cut(s)	281, 748
Hin1II	CATG	2 cut(s)	317, 571
Hin6I	GCGC	2 cut(s)	279, 746
HinP1I	GCGC	2 cut(s)	279, 746
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	6 cut(s)	122, 216, 231, 256, 290, 351
HpaII	CCGG	2 cut(s)	206, 375
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	8 cut(s)	15, 119, 133, 212, 223, 350, 534, 705
Hpy188III	TCNNGA	5 cut(s)	287, 298, 435, 631, 790
HpyAV	CCTTC	3 cut(s)	167, 400, 787
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 326, 335, 421
HpyF3I	CTNAG	4 cut(s)	275, 542, 702, 788
Hsp92II	CATG	2 cut(s)	317, 571
HspAI	GCGC	2 cut(s)	279, 746
KspI	CCGCGG	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	358, 437, 538, 643
LmnI	GCTCC	1 cut(s)	888
Lsp1109I	GCAGC	4 cut(s)	26, 347, 796, 887
LweI	GCATC	3 cut(s)	161, 463, 599
MaeIII	GTNAC	3 cut(s)	263, 563, 595
MalI	GATC	4 cut(s)	360, 439, 540, 645
MbiI	CCGCTC	1 cut(s)	938
MboI	GATC	4 cut(s)	358, 437, 538, 643
MboII	GAAGA	3 cut(s)	100, 225, 240
MflI	RGATCY	2 cut(s)	358, 643
MhlI	GDGCHC	1 cut(s)	885
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	4 cut(s)	127, 304, 322, 380
MluNI	TGGCCA	1 cut(s)	776
MlyI	GAGTC	5 cut(s)	116, 210, 225, 265, 345
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	452, 484, 541
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	592
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	2 cut(s)	164, 756
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	561
MspI	CCGG	2 cut(s)	206, 375
Mva1269I	GAATGC	1 cut(s)	812
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	4 cut(s)	55, 326, 335, 421
NdeI	CATATG	1 cut(s)	201
NdeII	GATC	4 cut(s)	358, 437, 538, 643
NlaIII	CATG	2 cut(s)	317, 571
NlaIV	GGNNCC	2 cut(s)	645, 861
NmuCI	GTSAC	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	592
PctI	GAATGC	1 cut(s)	812
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	5 cut(s)	41, 151, 337, 811, 902
PleI	GAGTC	5 cut(s)	116, 210, 225, 264, 345
PpsI	GAGTC	5 cut(s)	116, 210, 225, 264, 345
PshAI	GACNNNNGTC	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	885
PspEI	GGTNACC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	645, 861
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	2 cut(s)	137, 421
PsuI	RGATCY	2 cut(s)	358, 643
RsaI	GTAC	4 cut(s)	8, 73, 497, 920
RsaNI	GTAC	4 cut(s)	7, 72, 496, 919
SacI	GAGCTC	1 cut(s)	885
SacII	CCGCGG	1 cut(s)	562
SaqAI	TTAA	2 cut(s)	164, 756
SatI	GCNGC	5 cut(s)	40, 150, 336, 810, 901
Sau3AI	GATC	4 cut(s)	358, 437, 538, 643
ScaI	AGTACT	2 cut(s)	8, 497
SchI	GAGTC	5 cut(s)	116, 210, 225, 265, 345
SduI	GDGCHC	1 cut(s)	885
SfaNI	GCATC	3 cut(s)	161, 463, 599
SfcI	CTRYAG	1 cut(s)	333
Sfr303I	CCGCGG	1 cut(s)	562
SgrBI	CCGCGG	1 cut(s)	562
Sse9I	AATT	4 cut(s)	127, 304, 322, 380
SsiI	CCGC	5 cut(s)	150, 559, 561, 903, 936
SstI	GAGCTC	1 cut(s)	885
StyI	CCWWGG	2 cut(s)	75, 486
TaqI	TCGA	4 cut(s)	240, 457, 522, 940
TasI	AATT	4 cut(s)	127, 304, 322, 380
TatI	WGTACW	3 cut(s)	6, 495, 918
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	164, 756
Tru9I	TTAA	2 cut(s)	164, 756
TscAI	CASTG	2 cut(s)	337, 616
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	4 cut(s)	39, 335, 809, 900
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	650, 753
TspRI	CASTG	2 cut(s)	337, 616
XapI	RAATTY	3 cut(s)	127, 304, 322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
ZrmI	AGTACT	2 cut(s)	8, 497
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.