Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000978

Physical Location & Seq

Genomic Coordinates Reverse (-)

56602411 .. 56604031

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG367600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGGTACTCTCCTAAAGTTATCATTTCTCTGTTCTGCTCCTATATGCTTATATTGCATATTACATGTAGTGCTGTGATCCCTGCCTTGGCTTTGAAAGACTGTGAGTTTCCTGCCATCTTCAACTTCGGAGACTCAAATTCAGATACTGGTGGATTTGCCGCATCATCCCTTCCATCAACACCAACCCCACCTTATGGAGAGACCTATTTCCATATGCCGGCCGGAAGATTCTCTGATGGAAGACTCATCATCGATTTCCTTGCAAAGAGTCTTGGTCACCCTTATCTAAGCGCATATCTGGATTCTCTCGGGACAAATTTCTCGTATGGTGCAAATTTTGCAACTGCAGCTTCCACTATCAGACTCCCAGATCTCATTATACCAGCCGGTGGATTTAGTCCCTTCTACCTTGATATTCAATATATGCAGTTCCTGCAACTAAAATCCAGATCACAACTCATAAGGCGTCGAGGGGGAATATTTGCAAGTTTAATGCCCAAGGAGGAGTACTTCTCCAAAGCTTTATACACATTCGACACTGGCCAGAATGATCTTGGCGAGGGATTTTTCGGTAACCTGACTATACAGGAAGTAAATGCATCTGTTCCTGATATAATCACTGGTTTCTCAACGAATATCAAGAAAATATATGATTTGGGAGCAAGATCATTATGGATCCACAATACCGGGCCGATTGGCTGTCTCCCTTACATTCTAGCAAACTTCCCATCAGCTCAGAAAGATGAGATTGGCTGTGCAAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

256

Amino Acids

27.93

Weight (kDa)

6.06

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	40 - 237	5.2e-28	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26880 FvH4_2g26900 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950
malus_domestica	MD15G1348800.v1.1 MD15G1348900.v1.1 MD15G1349000.v1.1
prunus_persica	Prupe.1G497400_v2.0.a1 Prupe.1G497400_v2.0.a1 Prupe.1G497500_v2.0.a1 Prupe.1G497700_v2.0.a1 Prupe.1G497800_v2.0.a1 Prupe.1G497900_v2.0.a1
pyrus_communis	pycom15g31220
rosa_chinensis	RchiOBHm_Chr6g0295731 RchiOBHm_Chr6g0295741 RchiOBHm_Chr6g0295771 RchiOBHm_Chr6g0295811
rosa_laevigata	RLG00000011766 RLG00000011768 RLG00000011769 RLG00000011770 RLG00000011771 RLG00000011782
rosa_multiflora	Rmu_sc0007986.1_g000005 Rmu_sc0010663.1_g000005 Rmu_sc0011343.1_g000001 Rmu_sc0011343.1_g000009 Rmu_sc0015327.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172160 Rroxscaffold_7G00172170
rosa_rugosa	Rorug06G0253900 Rorug06G0254000
rosa_samantha	Rh6AG367300 Rh6AG367400 Rh6AG367600 Rh6AG367900 Rh6AG368000 Rh6BG375100 Rh6BG375300 Rh6BG375600 Rh6CG381500 Rh6CG381600 Rh6CG381800 Rh6CG381900 Rh6DG368200 Rh6DG368300 Rh6DG368400
rosa_wichuraiana	Rw6G032060 Rw6G032070 Rw6G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	197, 392
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	3 cut(s)	73, 673, 686
AcoI	YGGCCR	2 cut(s)	222, 544
AcsI	RAATTY	3 cut(s)	139, 319, 337
AcyI	GRCGYC	1 cut(s)	469
AfaI	GTAC	2 cut(s)	8, 512
AfiI	CCNNNNNNNGG	4 cut(s)	88, 197, 220, 392
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	97, 124, 422
AluBI	AGCT	3 cut(s)	353, 524, 737
AluI	AGCT	3 cut(s)	353, 524, 737
Alw26I	GTCTC	3 cut(s)	126, 197, 710
AlwI	GGATC	3 cut(s)	73, 673, 686
AlwNI	CAGNNNCTG	2 cut(s)	149, 436
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	222, 544, 692
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	139, 319, 337
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	692
AsuC2I	CCSGG	1 cut(s)	691
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	546
BamHI	GGATCC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	4 cut(s)	125, 184, 233, 739
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BcnI	CCSGG	1 cut(s)	691
BcoDI	GTCTC	3 cut(s)	126, 197, 710
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	348
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	2 cut(s)	162, 351
BlsI	GCNGC	2 cut(s)	163, 352
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	680
BmrFI	CCNGG	1 cut(s)	691
BmsI	GCATC	2 cut(s)	173, 611
BpiI	GAAGAC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
BpuMI	CCSGG	1 cut(s)	691
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	87, 501
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 197, 220, 392
Bse118I	RCCGGY	2 cut(s)	220, 389
Bse1I	ACTGG	3 cut(s)	154, 547, 628
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	87, 501
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	4 cut(s)	88, 197, 220, 392
BseMII	CTCAG	1 cut(s)	752
BseNI	ACTGG	3 cut(s)	154, 547, 628
BseRI	GAGGAG	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	224, 546, 694
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	4 cut(s)	221, 225, 390, 690
BslFI	GGGAC	2 cut(s)	328, 387
BslI	CCNNNNNNNGG	4 cut(s)	88, 197, 220, 392
BsmAI	GTCTC	3 cut(s)	126, 197, 710
BsmFI	GGGAC	2 cut(s)	328, 387
BsnI	GGCC	3 cut(s)	224, 546, 694
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	311
Bsp143I	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	3 cut(s)	224, 546, 694
BspCNI	CTCAG	1 cut(s)	751
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	680
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	3 cut(s)	73, 673, 686
BspTNI	GGTCTC	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	220, 389
BsrI	ACTGG	3 cut(s)	154, 547, 628
BssAI	RCCGGY	2 cut(s)	220, 389
BssECI	CCNNGG	2 cut(s)	87, 501
BssMI	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
BssNI	GRCGYC	1 cut(s)	469
BssT1I	CCWWGG	2 cut(s)	87, 501
Bst4CI	ACNGT	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	469
BstAPI	GCANNNNNTGC	2 cut(s)	341, 436
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	290, 738, 768
BstEII	GGTNACC	2 cut(s)	278, 575
BstF5I	GGATG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	6 cut(s)	81, 376, 455, 556, 671, 681
BstMAI	GTCTC	3 cut(s)	126, 197, 710
BstMBI	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 341, 350, 436
BstNSI	RCATGY	1 cut(s)	69
BstPI	GGTNACC	2 cut(s)	278, 575
BstSCI	CCNGG	1 cut(s)	689
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	373, 678
BstYI	RGATCY	2 cut(s)	373, 678
BstZI	CGGCCG	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	224, 546, 694
BsuTUI	ATCGAT	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	540, 621
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	2 cut(s)	149, 436
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	2 cut(s)	220, 389
Cfr13I	GGNCC	1 cut(s)	692
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	7, 511
CviAII	CATG	1 cut(s)	66
CviQI	GTAC	2 cut(s)	7, 511
DdeI	CTNAG	3 cut(s)	290, 738, 768
DpnI	GATC	6 cut(s)	80, 375, 454, 555, 670, 680
DpnII	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
EaeI	YGGCCR	2 cut(s)	222, 544
EagI	CGGCCG	1 cut(s)	222
EclXI	CGGCCG	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	87, 501
Eco31I	GGTCTC	1 cut(s)	197
Eco52I	CGGCCG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	311
Eco91I	GGTNACC	2 cut(s)	278, 575
EcoO65I	GGTNACC	2 cut(s)	278, 575
EcoT14I	CCWWGG	2 cut(s)	87, 501
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	2 cut(s)	87, 501
FaeI	CATG	1 cut(s)	69
FaqI	GGGAC	2 cut(s)	328, 387
FatI	CATG	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	162, 351
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	162, 351
FspBI	CTAG	1 cut(s)	719
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	162, 351
HaeIII	GGCC	3 cut(s)	224, 546, 694
HapII	CCGG	4 cut(s)	221, 225, 390, 690
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	6 cut(s)	134, 231, 246, 271, 305, 366
HpaII	CCGG	4 cut(s)	221, 225, 390, 690
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	131, 145, 238, 365, 741
Hpy188III	TCNNGA	5 cut(s)	302, 313, 450, 611, 643
Hpy99I	CGWCG	1 cut(s)	474
HpyAV	CCTTC	2 cut(s)	182, 415
HpyCH4III	ACNGT	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 341, 350, 436
HpyF3I	CTNAG	3 cut(s)	290, 738, 768
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	1 cut(s)	69
HspAI	GCGC	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
LmnI	GCTCC	2 cut(s)	44, 662
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	2 cut(s)	173, 611
MaeI	CTAG	1 cut(s)	719
MaeIII	GTNAC	2 cut(s)	278, 575
MalI	GATC	6 cut(s)	80, 375, 454, 555, 670, 680
MboI	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
MboII	GAAGA	3 cut(s)	112, 240, 255
MflI	RGATCY	2 cut(s)	373, 678
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	3 cut(s)	139, 319, 337
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	4 cut(s)	128, 240, 280, 360
MnlI	CCTC	3 cut(s)	467, 499, 556
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	604
MroNI	GCCGGC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	546
MspI	CCGG	4 cut(s)	221, 225, 390, 690
MspR9I	CCNGG	1 cut(s)	691
MwoI	GCNNNNNNNGC	4 cut(s)	55, 341, 350, 436
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	691
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	1 cut(s)	680
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	69
PciI	ACATGT	1 cut(s)	65
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	231, 305
PflMI	CCANNNNNTGG	2 cut(s)	197, 392
PkrI	GCNGC	2 cut(s)	163, 352
PleI	GAGTC	4 cut(s)	128, 240, 279, 360
PpsI	GAGTC	4 cut(s)	128, 240, 279, 360
PscI	ACATGT	1 cut(s)	65
PspEI	GGTNACC	2 cut(s)	278, 575
PspN4I	GGNNCC	1 cut(s)	680
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	2 cut(s)	149, 436
PsuI	RGATCY	2 cut(s)	373, 678
RsaI	GTAC	2 cut(s)	8, 512
RsaNI	GTAC	2 cut(s)	7, 511
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	162, 351
Sau3AI	GATC	6 cut(s)	78, 373, 452, 553, 668, 678
Sau96I	GGNCC	1 cut(s)	692
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	4 cut(s)	128, 240, 280, 360
ScrFI	CCNGG	1 cut(s)	691
SetI	ASST	7 cut(s)	196, 209, 355, 414, 526, 582, 739
SfaNI	GCATC	2 cut(s)	173, 611
SfcI	CTRYAG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	139, 319, 337
SsiI	CCGC	1 cut(s)	162
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	1 cut(s)	689
StyI	CCWWGG	2 cut(s)	87, 501
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	255, 472, 537
TasI	AATT	3 cut(s)	139, 319, 337
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	231, 305
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	547, 628
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	278
TspRI	CASTG	2 cut(s)	547, 628
Van91I	CCANNNNNTGG	2 cut(s)	197, 392
XapI	RAATTY	3 cut(s)	139, 319, 337
XceI	RCATGY	1 cut(s)	69
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XspI	CTAG	1 cut(s)	719
ZrmI	AGTACT	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.