Rmu_sc0015327.1_g000001

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015327.1
Physical Location & Seq
Forward (+)
1 .. 864
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015327.1_g000001.1.cds

Sequence Viewer

Length: 437 bp
ctgagaaagatgagattggctgtgcaagggcttacaatgaagtagctcaacattttaaccacgagctgaagcaggccatagttcaactcaggaaggatcttcctttggctgcaatcacttatgtagatgtgtattctgtcaaatactctcttttcaaggaacccgaaaagtatggatttgagctcccacttgttgcttgttgtggctccggtggtaagtacaactataacgccactgctgaatgtggagcaataattacagtcaatggaagccaaatccttgttggttcatgcaaaaacccctcaattagagtgaactgggatggtattcattacaccgaggcagctgcgaaatttgtttttgataaaatttcaactggagcgtattcagatccacctcttcccttgaaacaagcatgtcacaggagtttgaactaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

15.88

Weight (kDa)

7.11

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 104, 385
AcsI RAATTY 2 cut(s) 352, 368
AcuI CTGAAG 1 cut(s) 88
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 5 cut(s) 85, 156, 374, 408, 432
AluBI AGCT 4 cut(s) 46, 66, 183, 346
AluI AGCT 4 cut(s) 46, 66, 183, 346
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 2 cut(s) 104, 385
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 3 cut(s) 109, 343, 346
ApoI RAATTY 2 cut(s) 352, 368
BanII GRGCYC 1 cut(s) 185
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 96, 333, 355
BccI CCATC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BisI GCNGC 3 cut(s) 110, 344, 347
BlsI GCNGC 3 cut(s) 111, 345, 348
BmiI GGNNCC 2 cut(s) 161, 207
BmrI ACTGGG 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 322, 381
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 322, 381
BseXI GCAGC 3 cut(s) 96, 333, 355
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 209
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 96, 390
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 161, 207
BspPI GGATC 2 cut(s) 104, 385
BsrI ACTGG 2 cut(s) 322, 381
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 2 cut(s) 96, 390
BssSI CACGAG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 2, 88
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 2 cut(s) 99, 393
BstMBI GATC 2 cut(s) 96, 390
BstNSI RCATGY 1 cut(s) 419
BstV1I GCAGC 3 cut(s) 96, 333, 355
BstX2I RGATCY 2 cut(s) 96, 390
BstYI RGATCY 2 cut(s) 96, 390
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 290, 416
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 2, 88
DpnI GATC 2 cut(s) 98, 392
DpnII GATC 2 cut(s) 96, 390
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 2 cut(s) 293, 419
FaiI YATR 6 cut(s) 79, 122, 173, 227, 291, 417
FatI CATG 2 cut(s) 289, 415
Fnu4HI GCNGC 3 cut(s) 110, 344, 347
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 110, 344, 347
GluI GCNGC 3 cut(s) 110, 344, 347
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 209
Hin1II CATG 2 cut(s) 293, 419
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 25, 112, 293
HpyF3I CTNAG 2 cut(s) 2, 88
Hsp92II CATG 2 cut(s) 293, 419
Kzo9I GATC 2 cut(s) 96, 390
LmnI GCTCC 4 cut(s) 188, 211, 247, 379
LpnPI CCDG 6 cut(s) 58, 75, 222, 303, 362, 408
Lsp1109I GCAGC 3 cut(s) 96, 333, 355
MaeIII GTNAC 1 cut(s) 418
MalI GATC 2 cut(s) 98, 392
MboI GATC 2 cut(s) 96, 390
MboII GAAGA 2 cut(s) 91, 391
MflI RGATCY 2 cut(s) 96, 390
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 4 cut(s) 254, 305, 352, 368
MnlI CCTC 3 cut(s) 312, 333, 407
MseI TTAA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 1 cut(s) 209
NdeII GATC 2 cut(s) 96, 390
NlaIII CATG 2 cut(s) 293, 419
NlaIV GGNNCC 2 cut(s) 161, 207
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 419
PkrI GCNGC 3 cut(s) 111, 345, 348
Psp124BI GAGCTC 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 161, 207
PsuI RGATCY 2 cut(s) 96, 390
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 110, 344, 347
Sau3AI GATC 2 cut(s) 96, 390
SduI GDGCHC 1 cut(s) 185
SetI ASST 5 cut(s) 48, 68, 185, 348, 399
Sse9I AATT 4 cut(s) 254, 305, 352, 368
SstI GAGCTC 1 cut(s) 185
TaaI ACNGT 1 cut(s) 261
TasI AATT 4 cut(s) 254, 305, 352, 368
TatI WGTACW 1 cut(s) 218
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 109, 343, 346
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 53, 278, 319
TspRI CASTG 1 cut(s) 240
XapI RAATTY 2 cut(s) 352, 368
XceI RCATGY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.