Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000978

Physical Location & Seq

Genomic Coordinates Reverse (-)

60408970 .. 60412008

Gene Structure 3039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG375100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGAGACCTATTTTCATATGCCGGTTGGAAGAATCTCAGATGGAAGACTCATTGTCGATTTCCTCGCTATTTTTTGGTTCAGCAACGAGTCTTGGTCATCCTTATCTAAGCGCATATCTGGATTCCCTCGGGACCAATTTCTCGCATGGTGCAAATTTTGCCACTTCAGCTTCCACTATCAGACTCCCAGATCTCATTTTACCAGCCGGCGGATTTAGTCCCTTCTACCTTGATATTCAATACGTGCAGTTCCGGGAACTAAAGTCCAGATCACAACTCATAAGGCAGCGAGGGGGGATATTTGCAAGTTTAATGCCCAAGGAGGAGTACTTCTCCAAAGCTTTATACACATTCGACATTGGTCAGAATGATCTGGGCGAGGGATTTTTCGGTAACAAGACTATACAGGAAGTCAATGCATCTGTTCCTGATATAATCACTGGTTTCTCAACTAATATTAAGAAAATATATGATTTGGGGGCAAGATCATTTTGGATCCACAATACGGGGCCGATTGGCTGTGTCCCTTACATTTTGGTGAAATTCCCATCAGCTCAGAAAGATGAGGTTGGCTGTGCAAAGGCTTACAATGAAGTAGCTCAACATTTTAACCACGAGCTGAAGCAGGCCATAGTTCAACTCAGGAAGGATCTTCCTTTGGCTGCATTCACTTATGTAGATGTGTATTCCGTCAAATATTCTATTTTCAAGGAACCCAAAAAATATGGATTTGAGCTCCCACTTGTTGCTTGTTGTGGCTATGGTGGTAAGTACAACTATAACAGTAGTGCAGGATGTGGAACAACAATCACAGTCAATGGAAGTCAAATCTTTGTTGGCTCATGCAAGAACCCATCAGCTAGAGTGAACTGGGATGGGATTCATTATACTGAGGCAGCTGCGAAATTTGTTTTTGAGAAAATCTCAACTGGAGCATATTCAGATCCACCTCTGCCATTGAAACAAGCATGCCACAGGAGTGGAAATAAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

333

Amino Acids

36.87

Weight (kDa)

8.63

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 309	5.1e-36	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26880 FvH4_2g26900 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950
malus_domestica	MD15G1348800.v1.1 MD15G1348900.v1.1 MD15G1349000.v1.1
prunus_persica	Prupe.1G497400_v2.0.a1 Prupe.1G497400_v2.0.a1 Prupe.1G497500_v2.0.a1 Prupe.1G497700_v2.0.a1 Prupe.1G497800_v2.0.a1 Prupe.1G497900_v2.0.a1
pyrus_communis	pycom15g31220
rosa_chinensis	RchiOBHm_Chr6g0295731 RchiOBHm_Chr6g0295741 RchiOBHm_Chr6g0295771 RchiOBHm_Chr6g0295811
rosa_laevigata	RLG00000011766 RLG00000011768 RLG00000011769 RLG00000011770 RLG00000011771 RLG00000011782
rosa_multiflora	Rmu_sc0007986.1_g000005 Rmu_sc0010663.1_g000005 Rmu_sc0011343.1_g000001 Rmu_sc0011343.1_g000009 Rmu_sc0015327.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172160 Rroxscaffold_7G00172170
rosa_rugosa	Rorug06G0253900 Rorug06G0254000
rosa_samantha	Rh6AG367300 Rh6AG367400 Rh6AG367600 Rh6AG367900 Rh6AG368000 Rh6BG375100 Rh6BG375300 Rh6BG375600 Rh6CG381500 Rh6CG381600 Rh6CG381800 Rh6CG381900 Rh6DG368200 Rh6DG368300 Rh6DG368400
rosa_wichuraiana	Rw6G032060 Rw6G032070 Rw6G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	4 cut(s)	493, 506, 660, 941
AcsI	RAATTY	3 cut(s)	157, 545, 908
AcuI	CTGAAG	2 cut(s)	153, 644
AfaI	GTAC	2 cut(s)	332, 776
AfiI	CCNNNNNNNGG	2 cut(s)	212, 508
AgsI	TTSAA	4 cut(s)	242, 641, 712, 964
AhdI	GACNNNNNGTC	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	981
AluBI	AGCT	8 cut(s)	173, 344, 557, 602, 622, 739, 863, 902
AluI	AGCT	8 cut(s)	173, 344, 557, 602, 622, 739, 863, 902
Alw21I	GWGCWC	1 cut(s)	741
AlwI	GGATC	4 cut(s)	493, 506, 660, 941
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	512, 630
ApeKI	GCWGC	4 cut(s)	289, 665, 899, 902
ApoI	RAATTY	3 cut(s)	157, 545, 908
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	135, 512
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	135
BamHI	GGATCC	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	741
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	301, 652, 889, 911
BccI	CCATC	4 cut(s)	37, 559, 865, 872
BcnI	CCSGG	1 cut(s)	257
BfaI	CTAG	1 cut(s)	864
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	4 cut(s)	290, 666, 900, 903
BlsI	GCNGC	4 cut(s)	291, 667, 901, 904
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	135, 512
BmiI	GGNNCC	4 cut(s)	136, 500, 513, 717
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	1 cut(s)	431
BmuI	ACTGGG	1 cut(s)	883
BoxI	GACNNNNGTC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	54
BplI	GAGNNNNNCTC	4 cut(s)	320, 352, 911, 943
BpmI	CTGGAG	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	130, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 508
Bse118I	RCCGGY	2 cut(s)	24, 209
Bse1I	ACTGG	3 cut(s)	448, 878, 937
BseDI	CCNNGG	2 cut(s)	130, 321
BseGI	GGATG	3 cut(s)	100, 803, 883
BseLI	CCNNNNNNNGG	2 cut(s)	212, 508
BseMII	CTCAG	4 cut(s)	53, 572, 658, 885
BseNI	ACTGG	3 cut(s)	448, 878, 937
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	4 cut(s)	301, 652, 889, 911
BsgI	GTGCAG	2 cut(s)	269, 813
BshFI	GGCC	2 cut(s)	514, 632
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	25, 210, 256
BslFI	GGGAC	3 cut(s)	148, 207, 512
BslI	CCNNNNNNNGG	2 cut(s)	212, 508
BsmFI	GGGAC	3 cut(s)	148, 207, 512
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	2 cut(s)	514, 632
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	514, 632
BspCNI	CTCAG	4 cut(s)	52, 571, 657, 886
BspLI	GGNNCC	4 cut(s)	136, 500, 513, 717
BspPI	GGATC	4 cut(s)	493, 506, 660, 941
BsrFI	RCCGGY	2 cut(s)	24, 209
BsrI	ACTGG	3 cut(s)	448, 878, 937
BssAI	RCCGGY	2 cut(s)	24, 209
BssECI	CCNNGG	2 cut(s)	130, 321
BssMI	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	788, 817
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	3 cut(s)	211, 630, 973
BstDEI	CTNAG	5 cut(s)	39, 110, 558, 644, 894
BstF5I	GGATG	3 cut(s)	100, 803, 883
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	7 cut(s)	196, 275, 376, 491, 501, 655, 949
BstMBI	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 170
BstNSI	RCATGY	1 cut(s)	975
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	4 cut(s)	301, 652, 889, 911
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	4 cut(s)	193, 498, 652, 946
BstXI	CCANNNNNNTGG	1 cut(s)	983
BstYI	RGATCY	4 cut(s)	193, 498, 652, 946
BsuRI	GGCC	2 cut(s)	514, 632
BtsCI	GGATG	3 cut(s)	100, 803, 883
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	211, 630, 973
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	2 cut(s)	24, 209
Cfr13I	GGNCC	2 cut(s)	135, 512
Csp6I	GTAC	2 cut(s)	331, 775
CviAII	CATG	3 cut(s)	149, 846, 972
CviQI	GTAC	2 cut(s)	331, 775
DdeI	CTNAG	5 cut(s)	39, 110, 558, 644, 894
DpnI	GATC	7 cut(s)	195, 274, 375, 490, 500, 654, 948
DpnII	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
DriI	GACNNNNNGTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	739
Eco57I	CTGAAG	2 cut(s)	153, 644
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	152, 849, 975
FaqI	GGGAC	3 cut(s)	148, 207, 512
FatI	CATG	3 cut(s)	148, 845, 971
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	4 cut(s)	290, 666, 900, 903
FokI	GGATG	3 cut(s)	87, 810, 890
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	4 cut(s)	290, 666, 900, 903
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	290, 666, 900, 903
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	2 cut(s)	514, 632
HapII	CCGG	3 cut(s)	25, 210, 256
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	152, 849, 975
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	6 cut(s)	35, 50, 91, 125, 186, 883
HpaII	CCGG	3 cut(s)	25, 210, 256
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	5 cut(s)	42, 185, 369, 561, 946
Hpy188III	TCNNGA	5 cut(s)	122, 133, 270, 431, 646
Hpy8I	GTNNAC	1 cut(s)	871
HpyAV	CCTTC	2 cut(s)	235, 643
HpyCH4III	ACNGT	2 cut(s)	788, 817
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	8 cut(s)	155, 250, 308, 422, 581, 668, 794, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 170
HpyF3I	CTNAG	5 cut(s)	39, 110, 558, 644, 894
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	152, 849, 975
HspAI	GCGC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
LmnI	GCTCC	2 cut(s)	744, 935
Lsp1109I	GCAGC	4 cut(s)	301, 652, 889, 911
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	7 cut(s)	195, 274, 375, 490, 500, 654, 948
MboI	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
MboII	GAAGA	3 cut(s)	44, 59, 647
MflI	RGATCY	4 cut(s)	193, 498, 652, 946
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	4 cut(s)	139, 157, 545, 908
MlyI	GAGTC	3 cut(s)	44, 100, 180
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	76, 140, 287, 319, 376, 562, 889, 963
Mph1103I	ATGCAT	1 cut(s)	424
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	3 cut(s)	314, 462, 612
MslI	CAYNNNNRTG	2 cut(s)	539, 981
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	3 cut(s)	25, 210, 256
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	668
MwoI	GCNNNNNNNGC	2 cut(s)	161, 170
NaeI	GCCGGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	257
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	152, 849, 975
NlaIV	GGNNCC	4 cut(s)	136, 500, 513, 717
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	975
OliI	CACNNNNGTG	1 cut(s)	981
PaeI	GCATGC	1 cut(s)	975
PctI	GAATGC	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	35, 125, 883
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	291, 667, 901, 904
PleI	GAGTC	3 cut(s)	44, 99, 180
PpsI	GAGTC	3 cut(s)	44, 99, 180
Ppu21I	YACGTR	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	741
PspN4I	GGNNCC	4 cut(s)	136, 500, 513, 717
PspPI	GGNCC	2 cut(s)	135, 512
PsuI	RGATCY	4 cut(s)	193, 498, 652, 946
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	2 cut(s)	332, 776
RsaNI	GTAC	2 cut(s)	331, 775
RseI	CAYNNNNRTG	2 cut(s)	539, 981
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	3 cut(s)	314, 462, 612
SatI	GCNGC	4 cut(s)	290, 666, 900, 903
Sau3AI	GATC	7 cut(s)	193, 272, 373, 488, 498, 652, 946
Sau96I	GGNCC	2 cut(s)	135, 512
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	3 cut(s)	44, 100, 180
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	539, 981
SphI	GCATGC	1 cut(s)	975
Sse9I	AATT	4 cut(s)	139, 157, 545, 908
SsiI	CCGC	1 cut(s)	213
SspI	AATATT	2 cut(s)	460, 701
SspMI	CTAG	1 cut(s)	864
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	788, 817
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	59, 357
TasI	AATT	4 cut(s)	139, 157, 545, 908
TatI	WGTACW	2 cut(s)	330, 774
TfiI	GAWTC	3 cut(s)	35, 125, 883
Tru1I	TTAA	3 cut(s)	314, 462, 612
Tru9I	TTAA	3 cut(s)	314, 462, 612
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	4 cut(s)	289, 665, 899, 902
TspDTI	ATGAA	3 cut(s)	7, 609, 875
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	3 cut(s)	157, 545, 908
XceI	RCATGY	1 cut(s)	975
XspI	CTAG	1 cut(s)	864
ZrmI	AGTACT	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.