Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000978

Physical Location & Seq

Genomic Coordinates Forward (+)

12455987 .. 12458748

Gene Structure 2762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCCCAAGGAGGAGTACTTCTCCAAAGCTTTATACACATTCGACATTGGTCAGAATGATCTTGGCGAGGGATTTTTCGGTAACAAGACTATACAGGAAGTCAATGCATCTGTTCCTGATATAATCACTGGTTTCTCAACTAATATTAAGAAAATATATGATTTGGGGGCAAGATCATTTTGGATCCACAATACGGGGCCGATTGGCTGTGTCCCTTACATTTTGGTGAAATTCCCATCAGCTCAGAAAGATGAGGTTGGCTGTGCAAAGGCTTACAATAAAGTAGCTCAACATTTTAACCACGAGCTGAAGCAGGCCATAGTTCAACTCAGGAAGGATCTTCCTTTGGCTGCATTCACTTACGTAGATGTGTATTCCGTCAAATATTCTATTTTCAAGGAACCCAAAAAATATGGATTTGAGCTCCCACTTGTTGCTTGTTGTGGCTATGGTGGTAAGTACAACTATAACAGTAATACAGGATGTGGAGCAACAATCACAATCAATGGAAGCCAAATCTTTGTTGGCTCATGCAAGAACCCATCAGCTAGAGTGAACTGGGATGGGATTCATTATACTGAGGCAGCTGCGAAATTTGTTTTTGAGAAAATCTCAACTGGAGCATATTCAGATCCACCTCTGCCATTGAAACAAGCATGCCACAGGAGTGGAAATAAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

228

Amino Acids

25.27

Weight (kDa)

9.01

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 204	3.4e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26880 FvH4_2g26900 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950
malus_domestica	MD15G1348800.v1.1 MD15G1348900.v1.1 MD15G1349000.v1.1
prunus_persica	Prupe.1G497400_v2.0.a1 Prupe.1G497400_v2.0.a1 Prupe.1G497500_v2.0.a1 Prupe.1G497700_v2.0.a1 Prupe.1G497800_v2.0.a1 Prupe.1G497900_v2.0.a1
pyrus_communis	pycom15g31220
rosa_chinensis	RchiOBHm_Chr6g0295731 RchiOBHm_Chr6g0295741 RchiOBHm_Chr6g0295771 RchiOBHm_Chr6g0295811
rosa_laevigata	RLG00000011766 RLG00000011768 RLG00000011769 RLG00000011770 RLG00000011771 RLG00000011782
rosa_multiflora	Rmu_sc0007986.1_g000005 Rmu_sc0010663.1_g000005 Rmu_sc0011343.1_g000001 Rmu_sc0011343.1_g000009 Rmu_sc0015327.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172160 Rroxscaffold_7G00172170
rosa_rugosa	Rorug06G0253900 Rorug06G0254000
rosa_samantha	Rh6AG367300 Rh6AG367400 Rh6AG367600 Rh6AG367900 Rh6AG368000 Rh6BG375100 Rh6BG375300 Rh6BG375600 Rh6CG381500 Rh6CG381600 Rh6CG381800 Rh6CG381900 Rh6DG368200 Rh6DG368300 Rh6DG368400
rosa_wichuraiana	Rw6G032060 Rw6G032070 Rw6G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	178, 191, 345, 626
AcsI	RAATTY	2 cut(s)	230, 593
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	17, 461
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	326, 397, 649
AleI	CACNNNNGTG	1 cut(s)	666
AluBI	AGCT	7 cut(s)	29, 242, 287, 307, 424, 548, 587
AluI	AGCT	7 cut(s)	29, 242, 287, 307, 424, 548, 587
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	4 cut(s)	178, 191, 345, 626
AoxI	GGCC	2 cut(s)	197, 315
ApeKI	GCWGC	3 cut(s)	350, 584, 587
ApoI	RAATTY	2 cut(s)	230, 593
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	426
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	337, 574, 596
BccI	CCATC	3 cut(s)	244, 550, 557
BfaI	CTAG	1 cut(s)	549
BisI	GCNGC	3 cut(s)	351, 585, 588
BlsI	GCNGC	3 cut(s)	352, 586, 589
BmcAI	AGTACT	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	185, 198, 402
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	568
BoxI	GACNNNNGTC	1 cut(s)	48
BplI	GAGNNNNNCTC	3 cut(s)	37, 596, 628
BpmI	CTGGAG	1 cut(s)	639
BsaAI	YACGTR	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	133, 563, 622
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	488, 568
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	257, 343, 570
BseNI	ACTGG	3 cut(s)	133, 563, 622
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	337, 574, 596
BshFI	GGCC	2 cut(s)	199, 317
BsiHKAI	GWGCWC	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	199, 317
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	58, 173, 183, 337, 631
BspANI	GGCC	2 cut(s)	199, 317
BspCNI	CTCAG	3 cut(s)	256, 342, 571
BspLI	GGNNCC	3 cut(s)	185, 198, 402
BspPI	GGATC	4 cut(s)	178, 191, 345, 626
BsrI	ACTGG	3 cut(s)	133, 563, 622
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	5 cut(s)	58, 173, 183, 337, 631
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	473
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	315, 658
BstDEI	CTNAG	3 cut(s)	243, 329, 579
BstF5I	GGATG	2 cut(s)	488, 568
BstKTI	GATC	5 cut(s)	61, 176, 186, 340, 634
BstMBI	GATC	5 cut(s)	58, 173, 183, 337, 631
BstNSI	RCATGY	1 cut(s)	660
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSNI	TACGTA	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	337, 574, 596
BstX2I	RGATCY	3 cut(s)	183, 337, 631
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	3 cut(s)	183, 337, 631
BsuRI	GGCC	2 cut(s)	199, 317
BtsCI	GGATG	2 cut(s)	488, 568
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	315, 658
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	16, 460
CviAII	CATG	2 cut(s)	531, 657
CviQI	GTAC	2 cut(s)	16, 460
DdeI	CTNAG	3 cut(s)	243, 329, 579
DpnI	GATC	5 cut(s)	60, 175, 185, 339, 633
DpnII	GATC	5 cut(s)	58, 173, 183, 337, 631
Ecl136II	GAGCTC	1 cut(s)	424
Eco105I	TACGTA	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	534, 660
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	530, 656
Fnu4HI	GCNGC	3 cut(s)	351, 585, 588
FokI	GGATG	2 cut(s)	495, 575
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	3 cut(s)	351, 585, 588
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	3 cut(s)	351, 585, 588
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	2 cut(s)	199, 317
Hin1II	CATG	2 cut(s)	534, 660
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	1 cut(s)	568
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	3 cut(s)	54, 246, 631
Hpy188III	TCNNGA	2 cut(s)	116, 331
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	4 cut(s)	107, 266, 353, 534
HpyF3I	CTNAG	3 cut(s)	243, 329, 579
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	534, 660
Kzo9I	GATC	5 cut(s)	58, 173, 183, 337, 631
LmnI	GCTCC	3 cut(s)	429, 488, 620
LpnPI	CCDG	9 cut(s)	80, 114, 129, 299, 316, 465, 544, 603, 649
Lsp1109I	GCAGC	3 cut(s)	337, 574, 596
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	5 cut(s)	60, 175, 185, 339, 633
MboI	GATC	5 cut(s)	58, 173, 183, 337, 631
MboII	GAAGA	1 cut(s)	332
MflI	RGATCY	3 cut(s)	183, 337, 631
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	2 cut(s)	230, 593
MnlI	CCTC	5 cut(s)	4, 61, 247, 574, 648
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	2 cut(s)	147, 297
MslI	CAYNNNNRTG	2 cut(s)	224, 666
MspA1I	CMGCKG	1 cut(s)	587
Mva1269I	GAATGC	1 cut(s)	353
NdeII	GATC	5 cut(s)	58, 173, 183, 337, 631
NlaIII	CATG	2 cut(s)	534, 660
NlaIV	GGNNCC	3 cut(s)	185, 198, 402
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	666
PaeI	GCATGC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	3 cut(s)	352, 586, 589
Ppu21I	YACGTR	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	185, 198, 402
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	3 cut(s)	183, 337, 631
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	17, 461
RsaNI	GTAC	2 cut(s)	16, 460
RseI	CAYNNNNRTG	2 cut(s)	224, 666
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	147, 297
SatI	GCNGC	3 cut(s)	351, 585, 588
Sau3AI	GATC	5 cut(s)	58, 173, 183, 337, 631
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	224, 666
SnaBI	TACGTA	1 cut(s)	364
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	2 cut(s)	230, 593
SspI	AATATT	2 cut(s)	145, 386
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	230, 593
TatI	WGTACW	2 cut(s)	15, 459
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	2 cut(s)	147, 297
Tru9I	TTAA	2 cut(s)	147, 297
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	3 cut(s)	350, 584, 587
TspDTI	ATGAA	1 cut(s)	560
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	230, 593
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XspI	CTAG	1 cut(s)	549
ZrmI	AGTACT	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.