Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000978

Physical Location & Seq

Genomic Coordinates Reverse (-)

56455020 .. 56457343

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG368300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCCGGTCGGAAGATTCTCTGATGGAAGACTCATTATCGACTTCCTTGCAAAGAGTCTTGGTCATCCTTATCTAAGCGCATATCTGGATTCTCTCGGGACAAATTTCTCGCATGGTGCAAATTTCGCCACTGCAGCTTCCACTATCAGACTCCCAGATCTCATTATACCAGCCGGTGGATTTAGTCCCTTCTACCTTGATATTCAATATGTGCAGTTCCTGCAGCTAAAATCCAGATCACAACTCATAAGGCATCGAGGGGGAATATTTGCAAGTTTAATGCCCAAGGAGGAGTACTTCTCCAATGCTTTATACACATTCGACATTGGCCAGAATGATCTTGGCGAGGGATTTTTCAGTAACCTGACTATACAGGAAGTAAATGCATCTGTTCCTGATATAATCACTGGTTTCTCAACGAATATCAAGAAAATATATGATTTGGGAGCACGATCATTATGGATCCACAATACGGGACCGATTGGCTGTCTCCCTTACGTTGTGGCAAACTTCCCAGCTGCTGAGAAAGATGAGATTGGCTGTGCAAAGGTTTACAATGAAGTAGCTGAACATTTTAACCATGAGCTGAAGCAGGCTATAGTTCAACTCAGGAAGGATCTTCCTAAGGCTGCATTTACTTATGTAGATGTGTATTCTGTCAAATACTCTCTTTTCAAGGAACCCGAGAAATATGGATTTGAGCTCCCACTTGTTGCTTGTTGTGGCTCCGGTGGTAAGTACAACTATAACGCCACTGCTGGATGTGGAGCAATAATTACAGTTAATGGAAGCCAAATCCTTGTTGGTTCATGCAAAAACCCCTCAATTAGAGTGAACTGGGATGGTATTCATTACACCGAGGCAGCTGCGAAATTTGTTTTTGATAAAATTTCAACCGGAGCGTATTCAGATCCACCTCTTCCCTTGAAACAAGCATGTCACAGGAGTTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006950 GO:0006952 GO:0008150 GO:0016787 GO:0016788 GO:0019863 GO:0019865 GO:0044877 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

318

Amino Acids

34.95

Weight (kDa)

7.06

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	4 - 297	2.9e-40	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26880 FvH4_2g26900 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950 FvH4_2g26950
malus_domestica	MD15G1348800.v1.1 MD15G1348900.v1.1 MD15G1349000.v1.1
prunus_persica	Prupe.1G497400_v2.0.a1 Prupe.1G497400_v2.0.a1 Prupe.1G497500_v2.0.a1 Prupe.1G497700_v2.0.a1 Prupe.1G497800_v2.0.a1 Prupe.1G497900_v2.0.a1
pyrus_communis	pycom15g31220
rosa_chinensis	RchiOBHm_Chr6g0295731 RchiOBHm_Chr6g0295741 RchiOBHm_Chr6g0295771 RchiOBHm_Chr6g0295811
rosa_laevigata	RLG00000011766 RLG00000011768 RLG00000011769 RLG00000011770 RLG00000011771 RLG00000011782
rosa_multiflora	Rmu_sc0007986.1_g000005 Rmu_sc0010663.1_g000005 Rmu_sc0011343.1_g000001 Rmu_sc0011343.1_g000009 Rmu_sc0015327.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172160 Rroxscaffold_7G00172170
rosa_rugosa	Rorug06G0253900 Rorug06G0254000
rosa_samantha	Rh6AG367300 Rh6AG367400 Rh6AG367600 Rh6AG367900 Rh6AG368000 Rh6BG375100 Rh6BG375300 Rh6BG375600 Rh6CG381500 Rh6CG381600 Rh6CG381800 Rh6CG381900 Rh6DG368200 Rh6DG368300 Rh6DG368400
rosa_wichuraiana	Rw6G032060 Rw6G032070 Rw6G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	176
AclWI	GGATC	4 cut(s)	457, 470, 624, 905
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	4 cut(s)	103, 121, 872, 888
AcuI	CTGAAG	1 cut(s)	608
AfaI	GTAC	2 cut(s)	296, 740
AfiI	CCNNNNNNNGG	2 cut(s)	176, 472
AgsI	TTSAA	6 cut(s)	206, 605, 676, 894, 928, 952
AluBI	AGCT	7 cut(s)	137, 226, 518, 566, 586, 703, 866
AluI	AGCT	7 cut(s)	137, 226, 518, 566, 586, 703, 866
Alw21I	GWGCWC	2 cut(s)	451, 705
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	4 cut(s)	457, 470, 624, 905
AlwNI	CAGNNNCTG	2 cut(s)	220, 521
Ama87I	CYCGRG	2 cut(s)	95, 683
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	6 cut(s)	134, 223, 518, 629, 863, 866
ApoI	RAATTY	4 cut(s)	103, 121, 872, 888
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	476
AvaI	CYCGRG	2 cut(s)	95, 683
AvaII	GGWCC	1 cut(s)	476
AxyI	CCTNAGG	1 cut(s)	624
BalI	TGGCCA	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	451, 705
BbvI	GCAGC	6 cut(s)	146, 235, 505, 616, 853, 875
BccI	CCATC	2 cut(s)	17, 836
BcgI	CGANNNNNNTGC	4 cut(s)	29, 63, 848, 882
BcoDI	GTCTC	1 cut(s)	494
BfmI	CTRYAG	3 cut(s)	132, 221, 597
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	6 cut(s)	135, 224, 519, 630, 864, 867
BlsI	GCNGC	6 cut(s)	136, 225, 520, 631, 865, 868
BmcAI	AGTACT	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	2 cut(s)	95, 683
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	4 cut(s)	464, 477, 681, 727
BmrI	ACTGGG	1 cut(s)	847
BmsI	GCATC	2 cut(s)	262, 395
BmuI	ACTGGG	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BsaJI	CCNNGG	2 cut(s)	285, 858
BsaWI	WCCGGW	2 cut(s)	728, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 472
Bse118I	RCCGGY	2 cut(s)	4, 173
Bse1I	ACTGG	2 cut(s)	412, 842
Bse21I	CCTNAGG	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	285, 858
BseGI	GGATG	3 cut(s)	64, 767, 847
BseLI	CCNNNNNNNGG	2 cut(s)	176, 472
BseMII	CTCAG	2 cut(s)	513, 622
BseNI	ACTGG	2 cut(s)	412, 842
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	6 cut(s)	146, 235, 505, 616, 853, 875
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	451, 705
BsiHKCI	CYCGRG	2 cut(s)	95, 683
BsiSI	CCGG	4 cut(s)	5, 174, 729, 897
BslFI	GGGAC	3 cut(s)	112, 171, 489
BslI	CCNNNNNNNGG	2 cut(s)	176, 472
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	3 cut(s)	112, 171, 489
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	2 cut(s)	95, 683
Bsp1286I	GDGCHC	2 cut(s)	451, 705
Bsp143I	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	514, 621
BspLI	GGNNCC	4 cut(s)	464, 477, 681, 727
BspMAI	CTGCAG	2 cut(s)	136, 225
BspPI	GGATC	4 cut(s)	457, 470, 624, 905
BsrFI	RCCGGY	2 cut(s)	4, 173
BsrI	ACTGG	2 cut(s)	412, 842
BssAI	RCCGGY	2 cut(s)	4, 173
BssECI	CCNNGG	2 cut(s)	285, 858
BssMI	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	1 cut(s)	924
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	4 cut(s)	74, 522, 608, 624
BstF5I	GGATG	3 cut(s)	64, 767, 847
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	7 cut(s)	160, 239, 340, 455, 465, 619, 913
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 134, 220
BstNSI	RCATGY	1 cut(s)	939
BstSFI	CTRYAG	3 cut(s)	132, 221, 597
BstV1I	GCAGC	6 cut(s)	146, 235, 505, 616, 853, 875
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	4 cut(s)	157, 462, 616, 910
BstYI	RGATCY	4 cut(s)	157, 462, 616, 910
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	64, 767, 847
BtsI	GCAGTG	2 cut(s)	129, 753
BtsIMutI	CAGTG	3 cut(s)	129, 405, 753
Cac8I	GCNNGC	1 cut(s)	594
CaiI	CAGNNNCTG	2 cut(s)	220, 521
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	2 cut(s)	4, 173
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	295, 739
CviAII	CATG	4 cut(s)	113, 581, 810, 936
CviQI	GTAC	2 cut(s)	295, 739
DdeI	CTNAG	4 cut(s)	74, 522, 608, 624
DpnI	GATC	7 cut(s)	159, 238, 339, 454, 464, 618, 912
DpnII	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
Ecl136II	GAGCTC	1 cut(s)	703
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	608
Eco81I	CCTNAGG	1 cut(s)	624
Eco88I	CYCGRG	2 cut(s)	95, 683
EcoICRI	GAGCTC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	116, 584, 813, 939
FaqI	GGGAC	3 cut(s)	112, 171, 489
FatI	CATG	4 cut(s)	112, 580, 809, 935
Fnu4HI	GCNGC	6 cut(s)	135, 224, 519, 630, 864, 867
FokI	GGATG	3 cut(s)	51, 774, 854
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	6 cut(s)	135, 224, 519, 630, 864, 867
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	135, 224, 519, 630, 864, 867
GsaI	CCCAGC	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	4 cut(s)	5, 174, 729, 897
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	116, 584, 813, 939
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	5 cut(s)	15, 30, 55, 89, 150
HpaII	CCGG	4 cut(s)	5, 174, 729, 897
Hpy166II	GTNNAC	2 cut(s)	553, 835
Hpy188I	TCNGA	4 cut(s)	11, 22, 149, 910
Hpy188III	TCNNGA	6 cut(s)	86, 97, 234, 395, 427, 610
Hpy8I	GTNNAC	2 cut(s)	553, 835
HpyAV	CCTTC	2 cut(s)	199, 607
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4IV	ACGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 134, 220
HpyF3I	CTNAG	4 cut(s)	74, 522, 608, 624
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	116, 584, 813, 939
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
LmnI	GCTCC	5 cut(s)	446, 708, 731, 767, 899
Lsp1109I	GCAGC	6 cut(s)	146, 235, 505, 616, 853, 875
LweI	GCATC	2 cut(s)	262, 395
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	359, 938
MalI	GATC	7 cut(s)	159, 238, 339, 454, 464, 618, 912
MboI	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
MboII	GAAGA	4 cut(s)	24, 39, 611, 911
MflI	RGATCY	4 cut(s)	157, 462, 616, 910
MhlI	GDGCHC	2 cut(s)	451, 705
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	6 cut(s)	103, 121, 774, 825, 872, 888
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	3 cut(s)	24, 64, 144
MnlI	CCTC	6 cut(s)	251, 283, 340, 832, 853, 927
Mox20I	TGGCCA	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	3 cut(s)	278, 576, 783
Msp20I	TGGCCA	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	518, 866
MspI	CCGG	4 cut(s)	5, 174, 729, 897
MwoI	GCNNNNNNNGC	3 cut(s)	125, 134, 220
NdeII	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
NlaIII	CATG	4 cut(s)	116, 584, 813, 939
NlaIV	GGNNCC	4 cut(s)	464, 477, 681, 727
NmuCI	GTSAC	1 cut(s)	938
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	15, 89
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	6 cut(s)	136, 225, 520, 631, 865, 868
PleI	GAGTC	3 cut(s)	24, 63, 144
PpsI	GAGTC	3 cut(s)	24, 63, 144
Psp124BI	GAGCTC	1 cut(s)	705
PspFI	CCCAGC	1 cut(s)	514
PspN4I	GGNNCC	4 cut(s)	464, 477, 681, 727
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	2 cut(s)	136, 225
PstNI	CAGNNNCTG	2 cut(s)	220, 521
PsuI	RGATCY	4 cut(s)	157, 462, 616, 910
PvuII	CAGCTG	2 cut(s)	518, 866
RsaI	GTAC	2 cut(s)	296, 740
RsaNI	GTAC	2 cut(s)	295, 739
SacI	GAGCTC	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	278, 576, 783
SatI	GCNGC	6 cut(s)	135, 224, 519, 630, 864, 867
Sau3AI	GATC	7 cut(s)	157, 236, 337, 452, 462, 616, 910
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	3 cut(s)	24, 64, 144
SduI	GDGCHC	2 cut(s)	451, 705
SfaNI	GCATC	2 cut(s)	262, 395
SfcI	CTRYAG	3 cut(s)	132, 221, 597
SinI	GGWCC	1 cut(s)	476
Sse9I	AATT	6 cut(s)	103, 121, 774, 825, 872, 888
SspI	AATATT	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	705
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	781
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	39, 256, 321
TaqII	GACCGA	1 cut(s)	493
TasI	AATT	6 cut(s)	103, 121, 774, 825, 872, 888
TatI	WGTACW	2 cut(s)	294, 738
TfiI	GAWTC	2 cut(s)	15, 89
Tru1I	TTAA	3 cut(s)	278, 576, 783
Tru9I	TTAA	3 cut(s)	278, 576, 783
TscAI	CASTG	3 cut(s)	136, 412, 760
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	6 cut(s)	134, 223, 518, 629, 863, 866
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	3 cut(s)	573, 798, 839
TspRI	CASTG	3 cut(s)	136, 412, 760
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	4 cut(s)	103, 121, 872, 888
XceI	RCATGY	1 cut(s)	939
XcmI	CCANNNNNNNNNTGG	2 cut(s)	338, 800
ZrmI	AGTACT	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.