Prupe.8G073100_v2.0.a1

Methylmalonate-semialdehyde dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
10655961 .. 10664355
8395 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G073100.2

Sequence Viewer

Length: 1617 bp
ATGTTGCAGCTTTCAATTCAAAGAGTGAGAAATTTGAAGGCTTTGAGGCCTGCGATCTTTGCTCTCAGAAGCTCTCACTTCTCCACAGCTGCCGAGCCGTCTTCCAAGCAGGGTAGCCCTCCGAGCGTTCCCAATCTAATTGGAGGTAGTTTTGTTAAATCACAATCATCTGCGTCCATTGATGTTATCAACCCTGCAACACAAGAAGTTGTTTCACAAGTTCCTTTGACCACAAATGAAGAGTTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCAATCATGGCGCCACACACCAGTTACGGCCCGTCAACGTGTCATGTTCAAGCTCCAAGAGCTTATTCGGAGAGACATTGATAAGCTTGCCTTGAATATTACCACTGAACAGGGAAAGACATTGAAGGATGCACATGGAGATGTATTTCGTGGGCTAGAGGTGGTGGAGCATGCTTGTGGTACAGCAACTCTGCAAATGGGGGAGTATGTTTCTAACGTATCAAATGGAATTGACACATACAGTATTAGAGAGCCGCTTGGTGTTTGTGCTGGTATTTGTCCCTTCAACTTTCCGGCAATGATTCCCTTATGGATGTTCCCACTTGCAGTTACTTGTGGGAATACCTTTGTCTTAAAGCCATCAGAAAAAGATCCAGGGGCTTCTGTAATTCTGGCAGAGTTAGCAATGGAGGCTGGTCTGCCTGATGGTGTCTTAAATATTGTTCATGGAACCAATGATATTGTCAATGCAATTTGTGATGACGAGGATATAAAAGCTGTATCATTTGTGGGTTCTAATACTGCTGGCATGCACATATATTCAAGAGCATCAGCAAAAGGGAAACGTGTTCAGTCTAATATGGGGGCAAAAAACCATGCAATTGTCATGCCTGATGCAAGTGCTGATGCTACTATGAATGCTTTAGTTGCTGCTGGCTTTGGTGCTGCAGGACAACGGTGCATGGCACTCAGCACAGTTGTCTTTGTTGGAGGTTCAAAGTCATGGGAGAACAAACTTGTGGAAGCTGCCAAAGCTCTGAAAGTAAGTGCTGGAACAGAACCTGATGCTGACCTTGGTCCCGTAATTAGCAAACAAGCAAAGGAACGGATATGCAAATTAATCCAGTCTGGTGTTGAAAGTGGTGCAAAGCTATTGCTTGATGGCAGAAATATAGCGGTTCCAGGATATGAGCATGGAAATTTCATTGGCCCCACGATCTTATCAAATGTTACAGCTGACATGGAGTGCCACAAGGAAGAAATTTTTGGTCCGGTTCTTCTTTGCTTGGAGGCTGACAGCTTAGAAGAGGCAATAAGCTTTGTTAACAGAAACAAATATGGCAATGGAGCTTCTATTTTTACTACATCTGGGGTAGCTGCAAGGAAATTTCAGACTGAGATAGAGGCTGGACAGGTTGGAATCAACGTTCCTATTCCAGTTCCCTTGCCATTTTTCTCTTTTACTGGCAACAAGGCATCTTTTGCAGGCGATCTGAATTTCTATGGTAAGGCTGGTGTTAACTTTTTCACCCAGATCAAAACAGTAACTCAGCAGTGGAAGAATTTACCCGGCAGCGGTGTAGTTAATCTCGCGATGCCAACTTCTCAGAAGGCATAG

Protein Analysis

539

Amino Acids

57.2

Weight (kDa)

7.57

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 288
AccII CGCG 1 cut(s) 1592
AciI CCGC 3 cut(s) 533, 1175, 1575
AclI AACGTT 1 cut(s) 1425
AclWI GGATC 1 cut(s) 644
AcsI RAATTY 6 cut(s) 31, 1198, 1260, 1385, 1495, 1561
AcyI GRCGYC 1 cut(s) 289
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 1574
AflIII ACRYGT 2 cut(s) 316, 844
AjnI CCWGG 2 cut(s) 652, 1180
AjuI GAANNNNNNNTTGG 4 cut(s) 327, 359, 1248, 1280
AloI GAACNNNNNNTCC 2 cut(s) 1410, 1442
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 1 cut(s) 644
AlwNI CAGNNNCTG 2 cut(s) 260, 1061
AoxI GGCC 3 cut(s) 47, 306, 1207
ApeKI GCWGC 9 cut(s) 7, 89, 251, 263, 929, 944, 1025, 1376, 1572
ApoI RAATTY 6 cut(s) 31, 1198, 1260, 1385, 1495, 1561
AseI ATTAAT 1 cut(s) 1118
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 4 cut(s) 307, 1076, 1208, 1268
AsuC2I CCSGG 1 cut(s) 1569
AsuHPI GGTGA 1 cut(s) 1519
AvaII GGWCC 2 cut(s) 1076, 1268
BanI GGYRCC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 9 cut(s) 19, 76, 238, 275, 916, 931, 1012, 1363, 1584
BccI CCATC 3 cut(s) 646, 698, 1154
BceAI ACGGC 2 cut(s) 82, 321
BciT130I CCWGG 2 cut(s) 654, 1182
BcnI CCSGG 1 cut(s) 1569
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 3 cut(s) 252, 261, 945
BfoI RGCGCY 1 cut(s) 292
Bme1390I CCNGG 3 cut(s) 654, 1182, 1569
Bme18I GGWCC 2 cut(s) 1076, 1268
BmgT120I GGNCC 4 cut(s) 307, 1076, 1208, 1268
BmiI GGNNCC 5 cut(s) 290, 730, 1078, 1179, 1210
BmrFI CCNGG 3 cut(s) 654, 1182, 1569
BmsI GCATC 7 cut(s) 397, 836, 883, 895, 1054, 1484, 1584
BoxI GACNNNNGTC 1 cut(s) 1074
BpiI GAAGAC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 1569
BsaHI GRCGYC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 653, 1072
BsaWI WCCGGW 1 cut(s) 1270
Bsc4I CCNNNNNNNGG 1 cut(s) 1574
Bse1I ACTGG 4 cut(s) 299, 1123, 1436, 1468
Bse3DI GCAATG 3 cut(s) 582, 690, 1348
BseBI CCWGG 2 cut(s) 654, 1182
BseDI CCNNGG 2 cut(s) 653, 1072
BseGI GGATG 2 cut(s) 412, 597
BseLI CCNNNNNNNGG 1 cut(s) 1574
BseMI GCAATG 3 cut(s) 582, 690, 1348
BseMII CTCAG 4 cut(s) 79, 982, 1386, 1562
BseNI ACTGG 4 cut(s) 299, 1123, 1436, 1468
BseXI GCAGC 9 cut(s) 19, 76, 238, 275, 916, 931, 1012, 1363, 1584
Bsh1236I CGCG 1 cut(s) 1592
BshFI GGCC 3 cut(s) 49, 308, 1209
BshNI GGYRCC 1 cut(s) 288
BsiSI CCGG 3 cut(s) 572, 1271, 1569
BslFI GGGAC 2 cut(s) 543, 1062
BslI CCNNNNNNNGG 1 cut(s) 1574
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 2 cut(s) 543, 1062
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 3 cut(s) 49, 308, 1209
Bsp143I GATC 5 cut(s) 54, 649, 1215, 1489, 1533
Bsp68I TCGCGA 1 cut(s) 1592
BspACI CCGC 3 cut(s) 533, 1175, 1575
BspANI GGCC 3 cut(s) 49, 308, 1209
BspCNI CTCAG 4 cut(s) 78, 981, 1387, 1561
BspFNI CGCG 1 cut(s) 1592
BspLI GGNNCC 5 cut(s) 290, 730, 1078, 1179, 1210
BspMAI CTGCAG 3 cut(s) 256, 265, 949
BspPI GGATC 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 288
BsrDI GCAATG 3 cut(s) 582, 690, 1348
BsrI ACTGG 4 cut(s) 299, 1123, 1436, 1468
BssECI CCNNGG 2 cut(s) 653, 1072
BssMI GATC 5 cut(s) 54, 649, 1215, 1489, 1533
BssNI GRCGYC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 1072
Bst2UI CCWGG 2 cut(s) 654, 1182
Bst4CI ACNGT 4 cut(s) 521, 957, 976, 1543
Bst6I CTCTTC 2 cut(s) 234, 1299
BstACI GRCGYC 1 cut(s) 289
BstAPI GCANNNNNTGC 2 cut(s) 260, 1481
BstC8I GCNNGC 8 cut(s) 51, 273, 366, 450, 805, 809, 934, 1486
BstDEI CTNAG 6 cut(s) 65, 968, 1300, 1395, 1548, 1605
BstF5I GGATG 2 cut(s) 412, 597
BstFNI CGCG 1 cut(s) 1592
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 5 cut(s) 57, 652, 1218, 1492, 1536
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 5 cut(s) 54, 649, 1215, 1489, 1533
BstNI CCWGG 2 cut(s) 654, 1182
BstNSI RCATGY 2 cut(s) 452, 811
BstPAI GACNNNNGTC 1 cut(s) 1074
BstSCI CCNGG 3 cut(s) 652, 1180, 1567
BstSFI CTRYAG 3 cut(s) 252, 261, 945
BstUI CGCG 1 cut(s) 1592
BstV1I GCAGC 9 cut(s) 19, 76, 238, 275, 916, 931, 1012, 1363, 1584
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 3 cut(s) 49, 308, 1209
BtgZI GCGATG 1 cut(s) 1607
BtsCI GGATG 2 cut(s) 412, 597
BtsI GCAGTG 2 cut(s) 261, 1559
BtsIMutI CAGTG 3 cut(s) 261, 381, 1559
BtuMI TCGCGA 1 cut(s) 1592
Cac8I GCNNGC 8 cut(s) 51, 273, 366, 450, 805, 809, 934, 1486
CaiI CAGNNNCTG 2 cut(s) 260, 1061
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 4 cut(s) 307, 1076, 1208, 1268
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 459
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 6 cut(s) 65, 968, 1300, 1395, 1548, 1605
DinI GGCGCC 1 cut(s) 290
DpnI GATC 5 cut(s) 56, 651, 1217, 1491, 1535
DpnII GATC 5 cut(s) 54, 649, 1215, 1489, 1533
DraI TTTAAA 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 234, 1299
EarI CTCTTC 2 cut(s) 234, 1299
Eco130I CCWWGG 1 cut(s) 1072
Eco147I AGGCCT 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 1076, 1268
EcoRII CCWGG 2 cut(s) 652, 1180
EcoT14I CCWWGG 1 cut(s) 1072
EgeI GGCGCC 1 cut(s) 290
EheI GGCGCC 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 1072
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 2 cut(s) 543, 1062
FokI GGATG 2 cut(s) 419, 604
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 3 cut(s) 49, 308, 1209
HapII CCGG 3 cut(s) 572, 1271, 1569
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 289
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 3 cut(s) 314, 1324, 1519
HindII GTYRAC 3 cut(s) 314, 1324, 1519
HindIII AAGCTT 2 cut(s) 362, 1315
HinfI GANTC 2 cut(s) 580, 1419
HpaI GTTAAC 2 cut(s) 1324, 1519
HpaII CCGG 3 cut(s) 572, 1271, 1569
HphI GGTGA 1 cut(s) 1519
Hpy166II GTNNAC 3 cut(s) 314, 1324, 1519
Hpy188I TCNGA 8 cut(s) 68, 123, 348, 643, 1038, 1392, 1494, 1608
Hpy188III TCNNGA 2 cut(s) 822, 1591
Hpy8I GTNNAC 3 cut(s) 314, 1324, 1519
HpyAV CCTTC 4 cut(s) 31, 397, 571, 1603
HpyCH4III ACNGT 4 cut(s) 521, 957, 976, 1543
HpyCH4IV ACGT 4 cut(s) 316, 495, 844, 1425
HpyF3I CTNAG 6 cut(s) 65, 968, 1300, 1395, 1548, 1605
HpySE526I ACGT 4 cut(s) 316, 495, 844, 1425
Hsp92I GRCGYC 1 cut(s) 289
HspAI GCGC 1 cut(s) 289
KasI GGCGCC 1 cut(s) 288
KspAI GTTAAC 2 cut(s) 1324, 1519
Kzo9I GATC 5 cut(s) 54, 649, 1215, 1489, 1533
LmnI GCTCC 3 cut(s) 336, 445, 1346
Lsp1109I GCAGC 9 cut(s) 19, 76, 238, 275, 916, 931, 1012, 1363, 1584
LweI GCATC 7 cut(s) 397, 836, 883, 895, 1054, 1484, 1584
MaeI CTAG 1 cut(s) 434
MaeII ACGT 4 cut(s) 316, 495, 844, 1425
MaeIII GTNAC 4 cut(s) 301, 607, 1228, 1543
MalI GATC 5 cut(s) 56, 651, 1217, 1491, 1535
MboI GATC 5 cut(s) 54, 649, 1215, 1489, 1533
MboII GAAGA 6 cut(s) 93, 251, 1268, 1268, 1316, 1570
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 1 cut(s) 649
Mly113I GGCGCC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 967, 1396
MseI TTAA 8 cut(s) 156, 246, 632, 713, 1118, 1323, 1518, 1584
MslI CAYNNNNRTG 2 cut(s) 417, 453
MspA1I CMGCKG 3 cut(s) 89, 1235, 1575
MspI CCGG 3 cut(s) 572, 1271, 1569
MspR9I CCNGG 3 cut(s) 654, 1182, 1569
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 2 cut(s) 654, 1182
MvnI CGCG 1 cut(s) 1592
NarI GGCGCC 1 cut(s) 289
NciI CCSGG 1 cut(s) 1569
NdeII GATC 5 cut(s) 54, 649, 1215, 1489, 1533
NlaIV GGNNCC 5 cut(s) 290, 730, 1078, 1179, 1210
NmeAIII GCCGAG 1 cut(s) 118
NruI TCGCGA 1 cut(s) 1592
NspI RCATGY 2 cut(s) 452, 811
PaeI GCATGC 2 cut(s) 452, 811
PceI AGGCCT 1 cut(s) 49
PctI GAATGC 1 cut(s) 922
PfeI GAWTC 2 cut(s) 580, 1419
PfoI TCCNGGA 1 cut(s) 1180
PluTI GGCGCC 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 1074
PshBI ATTAAT 1 cut(s) 1118
Psp1406I AACGTT 1 cut(s) 1425
Psp6I CCWGG 2 cut(s) 652, 1180
PspGI CCWGG 2 cut(s) 652, 1180
PspN4I GGNNCC 5 cut(s) 290, 730, 1078, 1179, 1210
PspPI GGNCC 4 cut(s) 307, 1076, 1208, 1268
PstI CTGCAG 3 cut(s) 256, 265, 949
PstNI CAGNNNCTG 2 cut(s) 260, 1061
PsuI RGATCY 1 cut(s) 649
PvuII CAGCTG 2 cut(s) 89, 1235
RruI TCGCGA 1 cut(s) 1592
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 2 cut(s) 417, 453
SaqAI TTAA 8 cut(s) 156, 246, 632, 713, 1118, 1323, 1518, 1584
Sau3AI GATC 5 cut(s) 54, 649, 1215, 1489, 1533
Sau96I GGNCC 4 cut(s) 307, 1076, 1208, 1268
ScrFI CCNGG 3 cut(s) 654, 1182, 1569
SfaNI GCATC 7 cut(s) 397, 836, 883, 895, 1054, 1484, 1584
SfcI CTRYAG 3 cut(s) 252, 261, 945
SfoI GGCGCC 1 cut(s) 290
SinI GGWCC 2 cut(s) 1076, 1268
SmiMI CAYNNNNRTG 2 cut(s) 417, 453
SphI GCATGC 2 cut(s) 452, 811
SseBI AGGCCT 1 cut(s) 49
SsiI CCGC 3 cut(s) 533, 1175, 1575
SspDI GGCGCC 1 cut(s) 288
SspI AATATT 2 cut(s) 376, 718
SspMI CTAG 1 cut(s) 434
StuI AGGCCT 1 cut(s) 49
StyD4I CCNGG 3 cut(s) 652, 1180, 1567
StyI CCWWGG 1 cut(s) 1072
TaaI ACNGT 4 cut(s) 521, 957, 976, 1543
TaiI ACGT 4 cut(s) 319, 498, 847, 1428
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 2 cut(s) 580, 1419
Tru1I TTAA 8 cut(s) 156, 246, 632, 713, 1118, 1323, 1518, 1584
Tru9I TTAA 8 cut(s) 156, 246, 632, 713, 1118, 1323, 1518, 1584
TscAI CASTG 3 cut(s) 261, 388, 1559
TseI GCWGC 9 cut(s) 7, 89, 251, 263, 929, 944, 1025, 1376, 1572
TspDTI ATGAA 4 cut(s) 252, 713, 929, 1192
TspGWI ACGGA 1 cut(s) 1120
TspRI CASTG 3 cut(s) 261, 388, 1559
VpaK11BI GGWCC 2 cut(s) 1076, 1268
VspI ATTAAT 1 cut(s) 1118
XapI RAATTY 6 cut(s) 31, 1198, 1260, 1385, 1495, 1561
XceI RCATGY 2 cut(s) 452, 811
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.