Aldehyde dehydrogenase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aldedh | PF00171 | 219 - 599 | 1e-114 | Aldehyde dehydrogenase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 254, 1994 |
| Acc36I | ACCTGC | 1 cut(s) | 1783 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 59 |
| AccI | GTMKAC | 1 cut(s) | 1888 |
| AccII | CGCG | 1 cut(s) | 433 |
| AciI | CCGC | 3 cut(s) | 431, 850, 1644 |
| AclWI | GGATC | 2 cut(s) | 508, 1556 |
| AcsI | RAATTY | 4 cut(s) | 241, 653, 1702, 1764 |
| AcuI | CTGAAG | 1 cut(s) | 821 |
| AdeI | CACNNNGTG | 1 cut(s) | 1043 |
| AfaI | GTAC | 4 cut(s) | 303, 1303, 1797, 2137 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 59, 602, 603, 1960 |
| AflII | CTTAAG | 1 cut(s) | 1136 |
| AflIII | ACRYGT | 3 cut(s) | 348, 812, 1115 |
| AgeI | ACCGGT | 1 cut(s) | 1774 |
| AgsI | TTSAA | 8 cut(s) | 71, 269, 547, 678, 751, 907, 1069, 1420 |
| AhlI | ACTAGT | 1 cut(s) | 1519 |
| AjiI | CACGTC | 1 cut(s) | 815 |
| AjnI | CCWGG | 1 cut(s) | 1156 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1752, 1784 |
| AleI | CACNNNNGTG | 1 cut(s) | 670 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1335, 1367, 1889, 1921 |
| Alw21I | GWGCWC | 2 cut(s) | 846, 930 |
| Alw26I | GTCTC | 1 cut(s) | 550 |
| AlwI | GGATC | 2 cut(s) | 508, 1556 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1798, 2139 |
| Ama87I | CYCGRG | 1 cut(s) | 1297 |
| ApeKI | GCWGC | 5 cut(s) | 755, 1178, 1448, 1964, 2048 |
| ApoI | RAATTY | 4 cut(s) | 241, 653, 1702, 1764 |
| AsiGI | ACCGGT | 1 cut(s) | 1774 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 542 |
| AspS9I | GGNCC | 3 cut(s) | 1580, 1712, 1772 |
| AsuC2I | CCSGG | 1 cut(s) | 1054 |
| AsuHPI | GGTGA | 5 cut(s) | 142, 589, 874, 995, 1612 |
| AsuNHI | GCTAGC | 1 cut(s) | 1400 |
| AvaI | CYCGRG | 1 cut(s) | 1297 |
| AvaII | GGWCC | 3 cut(s) | 1580, 1712, 1772 |
| BanII | GRGCYC | 1 cut(s) | 846 |
| Bbv12I | GWGCWC | 2 cut(s) | 846, 930 |
| BbvI | GCAGC | 5 cut(s) | 742, 1190, 1435, 1951, 2035 |
| BccI | CCATC | 6 cut(s) | 143, 958, 973, 1202, 1391, 1658 |
| BceAI | ACGGC | 1 cut(s) | 1449 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1628, 1662 |
| BciT130I | CCWGG | 1 cut(s) | 1158 |
| BcnI | CCSGG | 1 cut(s) | 1054 |
| BcoDI | GTCTC | 1 cut(s) | 550 |
| BcuI | ACTAGT | 1 cut(s) | 1519 |
| BfaI | CTAG | 6 cut(s) | 114, 1338, 1401, 1520, 1650, 1973 |
| BfmI | CTRYAG | 4 cut(s) | 473, 756, 974, 1449 |
| BfrI | CTTAAG | 1 cut(s) | 1136 |
| BfuAI | ACCTGC | 1 cut(s) | 1783 |
| BglII | AGATCT | 1 cut(s) | 82 |
| BisI | GCNGC | 5 cut(s) | 756, 1179, 1449, 1965, 2049 |
| BlsI | GCNGC | 5 cut(s) | 757, 1180, 1450, 1966, 2050 |
| Bme1390I | CCNGG | 2 cut(s) | 1054, 1158 |
| Bme18I | GGWCC | 3 cut(s) | 1580, 1712, 1772 |
| BmeT110I | CYCGRG | 1 cut(s) | 1297 |
| BmgBI | CACGTC | 1 cut(s) | 815 |
| BmgT120I | GGNCC | 3 cut(s) | 1580, 1712, 1772 |
| BmiI | GGNNCC | 2 cut(s) | 633, 1035 |
| BmrFI | CCNGG | 2 cut(s) | 1054, 1158 |
| BmrI | ACTGGG | 3 cut(s) | 591, 1097, 1560 |
| BmsI | GCATC | 5 cut(s) | 367, 603, 1010, 1387, 1399 |
| BmtI | GCTAGC | 1 cut(s) | 1404 |
| BmuI | ACTGGG | 3 cut(s) | 591, 1097, 1560 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1578 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1188 |
| BpuEI | CTTGAG | 2 cut(s) | 428, 437 |
| BpuMI | CCSGG | 1 cut(s) | 1054 |
| BsaI | GGTCTC | 1 cut(s) | 550 |
| BsaJI | CCNNGG | 4 cut(s) | 485, 931, 1157, 1228 |
| BsaWI | WCCGGW | 1 cut(s) | 1774 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1889, 1919 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 59, 602, 603, 1960 |
| Bse118I | RCCGGY | 2 cut(s) | 628, 1774 |
| Bse1I | ACTGG | 4 cut(s) | 597, 1103, 1566, 1583 |
| Bse3DI | GCAATG | 2 cut(s) | 2043, 2126 |
| BseBI | CCWGG | 1 cut(s) | 1158 |
| BseDI | CCNNGG | 4 cut(s) | 485, 931, 1157, 1228 |
| BseGI | GGATG | 6 cut(s) | 87, 358, 846, 969, 1101, 1414 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 59, 602, 603, 1960 |
| BseMI | GCAATG | 2 cut(s) | 2043, 2126 |
| BseMII | CTCAG | 2 cut(s) | 372, 906 |
| BseNI | ACTGG | 4 cut(s) | 597, 1103, 1566, 1583 |
| BseXI | GCAGC | 5 cut(s) | 742, 1190, 1435, 1951, 2035 |
| BseYI | CCCAGC | 1 cut(s) | 2078 |
| BsgI | GTGCAG | 1 cut(s) | 1590 |
| Bsh1236I | CGCG | 1 cut(s) | 433 |
| BshTI | ACCGGT | 1 cut(s) | 1774 |
| BsiHKAI | GWGCWC | 2 cut(s) | 846, 930 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1297 |
| BsiSI | CCGG | 3 cut(s) | 629, 1053, 1775 |
| BslFI | GGGAC | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 59, 602, 603, 1960 |
| BsmAI | GTCTC | 1 cut(s) | 550 |
| BsmFI | GGGAC | 1 cut(s) | 246 |
| BsmI | GAATGC | 2 cut(s) | 1317, 1426 |
| Bso31I | GGTCTC | 1 cut(s) | 550 |
| BsoBI | CYCGRG | 1 cut(s) | 1297 |
| Bsp1286I | GDGCHC | 2 cut(s) | 846, 930 |
| Bsp143I | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| Bsp19I | CCATGG | 1 cut(s) | 1228 |
| BspACI | CCGC | 3 cut(s) | 431, 850, 1644 |
| BspCNI | CTCAG | 2 cut(s) | 373, 907 |
| BspFNI | CGCG | 1 cut(s) | 433 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 2 cut(s) | 633, 1035 |
| BspMAI | CTGCAG | 3 cut(s) | 477, 760, 1453 |
| BspMI | ACCTGC | 1 cut(s) | 1783 |
| BspOI | GCTAGC | 1 cut(s) | 1404 |
| BspPI | GGATC | 2 cut(s) | 508, 1556 |
| BspTI | CTTAAG | 1 cut(s) | 1136 |
| BspTNI | GGTCTC | 1 cut(s) | 550 |
| BsrDI | GCAATG | 2 cut(s) | 2043, 2126 |
| BsrFI | RCCGGY | 2 cut(s) | 628, 1774 |
| BsrI | ACTGG | 4 cut(s) | 597, 1103, 1566, 1583 |
| BssAI | RCCGGY | 2 cut(s) | 628, 1774 |
| BssECI | CCNNGG | 4 cut(s) | 485, 931, 1157, 1228 |
| BssMI | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| BssNAI | GTATAC | 1 cut(s) | 1889 |
| BssT1I | CCWWGG | 2 cut(s) | 485, 1228 |
| Bst1107I | GTATAC | 1 cut(s) | 1889 |
| Bst2UI | CCWGG | 1 cut(s) | 1158 |
| Bst4CI | ACNGT | 3 cut(s) | 260, 1800, 2135 |
| Bst6I | CTCTTC | 2 cut(s) | 381, 738 |
| BstAFI | CTTAAG | 1 cut(s) | 1136 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1184 |
| BstC8I | GCNNGC | 3 cut(s) | 777, 1402, 1790 |
| BstDEI | CTNAG | 4 cut(s) | 381, 886, 915, 1188 |
| BstDSI | CCRYGG | 2 cut(s) | 931, 1228 |
| BstEII | GGTNACC | 2 cut(s) | 130, 1929 |
| BstF5I | GGATG | 6 cut(s) | 87, 358, 846, 969, 1101, 1414 |
| BstFNI | CGCG | 1 cut(s) | 433 |
| BstKTI | GATC | 5 cut(s) | 76, 85, 516, 1564, 1986 |
| BstMAI | GTCTC | 1 cut(s) | 550 |
| BstMBI | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 403, 776, 841, 1184, 1193 |
| BstNI | CCWGG | 1 cut(s) | 1158 |
| BstNSI | RCATGY | 5 cut(s) | 352, 956, 1119, 1325, 1792 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1578 |
| BstPI | GGTNACC | 2 cut(s) | 130, 1929 |
| BstSCI | CCNGG | 2 cut(s) | 1052, 1156 |
| BstSFI | CTRYAG | 4 cut(s) | 473, 756, 974, 1449 |
| BstUI | CGCG | 1 cut(s) | 433 |
| BstV1I | GCAGC | 5 cut(s) | 742, 1190, 1435, 1951, 2035 |
| BstX2I | RGATCY | 3 cut(s) | 82, 513, 1561 |
| BstYI | RGATCY | 3 cut(s) | 82, 513, 1561 |
| BstZ17I | GTATAC | 1 cut(s) | 1889 |
| BtgI | CCRYGG | 2 cut(s) | 931, 1228 |
| BtrI | CACGTC | 1 cut(s) | 815 |
| BtsCI | GGATG | 6 cut(s) | 87, 358, 846, 969, 1101, 1414 |
| BtsI | GCAGTG | 1 cut(s) | 1639 |
| BtsIMutI | CAGTG | 3 cut(s) | 604, 1573, 1639 |
| BveI | ACCTGC | 1 cut(s) | 1783 |
| Cac8I | GCNNGC | 3 cut(s) | 777, 1402, 1790 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1798, 2139 |
| CciI | TCATGA | 1 cut(s) | 331 |
| Cfr10I | RCCGGY | 2 cut(s) | 628, 1774 |
| Cfr13I | GGNCC | 3 cut(s) | 1580, 1712, 1772 |
| CseI | GACGC | 1 cut(s) | 422 |
| Csp6I | GTAC | 4 cut(s) | 302, 1302, 1796, 2136 |
| CspAI | ACCGGT | 1 cut(s) | 1774 |
| CviQI | GTAC | 4 cut(s) | 302, 1302, 1796, 2136 |
| DdeI | CTNAG | 4 cut(s) | 381, 886, 915, 1188 |
| DpnI | GATC | 5 cut(s) | 75, 84, 515, 1563, 1985 |
| DpnII | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| DraIII | CACNNNGTG | 1 cut(s) | 1043 |
| Eam1104I | CTCTTC | 2 cut(s) | 381, 738 |
| EarI | CTCTTC | 2 cut(s) | 381, 738 |
| Ecl136II | GAGCTC | 1 cut(s) | 844 |
| Eco130I | CCWWGG | 2 cut(s) | 485, 1228 |
| Eco24I | GRGCYC | 1 cut(s) | 846 |
| Eco31I | GGTCTC | 1 cut(s) | 550 |
| Eco47I | GGWCC | 3 cut(s) | 1580, 1712, 1772 |
| Eco53kI | GAGCTC | 1 cut(s) | 844 |
| Eco57I | CTGAAG | 1 cut(s) | 821 |
| Eco88I | CYCGRG | 1 cut(s) | 1297 |
| Eco91I | GGTNACC | 2 cut(s) | 130, 1929 |
| EcoICRI | GAGCTC | 1 cut(s) | 844 |
| EcoO65I | GGTNACC | 2 cut(s) | 130, 1929 |
| EcoRII | CCWGG | 1 cut(s) | 1156 |
| EcoT14I | CCWWGG | 2 cut(s) | 485, 1228 |
| EcoT22I | ATGCAT | 1 cut(s) | 1003 |
| EcoT38I | GRGCYC | 1 cut(s) | 846 |
| ErhI | CCWWGG | 2 cut(s) | 485, 1228 |
| FaqI | GGGAC | 1 cut(s) | 246 |
| FauNDI | CATATG | 1 cut(s) | 1613 |
| FblI | GTMKAC | 1 cut(s) | 1888 |
| Fnu4HI | GCNGC | 5 cut(s) | 756, 1179, 1449, 1965, 2049 |
| FokI | GGATG | 6 cut(s) | 74, 345, 833, 976, 1108, 1421 |
| FriOI | GRGCYC | 1 cut(s) | 846 |
| Fsp4HI | GCNGC | 5 cut(s) | 756, 1179, 1449, 1965, 2049 |
| FspBI | CTAG | 6 cut(s) | 114, 1338, 1401, 1520, 1650, 1973 |
| GluI | GCNGC | 5 cut(s) | 756, 1179, 1449, 1965, 2049 |
| GsaI | CCCAGC | 1 cut(s) | 2082 |
| HapII | CCGG | 3 cut(s) | 629, 1053, 1775 |
| HgaI | GACGC | 1 cut(s) | 422 |
| HincII | GTYRAC | 1 cut(s) | 480 |
| HindII | GTYRAC | 1 cut(s) | 480 |
| HindIII | AAGCTT | 2 cut(s) | 777, 833 |
| HinfI | GANTC | 5 cut(s) | 463, 662, 822, 1084, 1653 |
| HpaII | CCGG | 3 cut(s) | 629, 1053, 1775 |
| HphI | GGTGA | 5 cut(s) | 142, 589, 874, 995, 1612 |
| Hpy166II | GTNNAC | 4 cut(s) | 480, 1517, 1803, 1889 |
| Hpy188I | TCNGA | 2 cut(s) | 355, 535 |
| Hpy8I | GTNNAC | 4 cut(s) | 480, 1517, 1803, 1889 |
| Hpy99I | CGWCG | 1 cut(s) | 375 |
| HpyAV | CCTTC | 5 cut(s) | 229, 795, 901, 1075, 1597 |
| HpyCH4III | ACNGT | 3 cut(s) | 260, 1800, 2135 |
| HpyCH4IV | ACGT | 5 cut(s) | 687, 814, 902, 1528, 1575 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 403, 776, 841, 1184, 1193 |
| HpyF3I | CTNAG | 4 cut(s) | 381, 886, 915, 1188 |
| HpySE526I | ACGT | 5 cut(s) | 687, 814, 902, 1528, 1575 |
| Kzo9I | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| LmnI | GCTCC | 6 cut(s) | 322, 598, 841, 933, 1510, 2018 |
| Lsp1109I | GCAGC | 5 cut(s) | 742, 1190, 1435, 1951, 2035 |
| LweI | GCATC | 5 cut(s) | 367, 603, 1010, 1387, 1399 |
| MaeI | CTAG | 6 cut(s) | 114, 1338, 1401, 1520, 1650, 1973 |
| MaeII | ACGT | 5 cut(s) | 687, 814, 902, 1528, 1575 |
| MaeIII | GTNAC | 6 cut(s) | 130, 620, 1111, 1429, 1732, 1929 |
| MalI | GATC | 5 cut(s) | 75, 84, 515, 1563, 1985 |
| MboI | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| MboII | GAAGA | 8 cut(s) | 92, 299, 398, 755, 805, 1772, 1772, 1988 |
| MflI | RGATCY | 3 cut(s) | 82, 513, 1561 |
| MhlI | GDGCHC | 2 cut(s) | 846, 930 |
| MlyI | GAGTC | 1 cut(s) | 1647 |
| MmeI | TCCRAC | 1 cut(s) | 1471 |
| Mph1103I | ATGCAT | 1 cut(s) | 1003 |
| MroXI | GAANNNNTTC | 1 cut(s) | 542 |
| MseI | TTAA | 8 cut(s) | 341, 731, 831, 1137, 1217, 1248, 1473, 1755 |
| MslI | CAYNNNNRTG | 6 cut(s) | 330, 670, 957, 1320, 1388, 1874 |
| MspA1I | CMGCKG | 2 cut(s) | 1307, 1481 |
| MspCI | CTTAAG | 1 cut(s) | 1136 |
| MspI | CCGG | 3 cut(s) | 629, 1053, 1775 |
| MspR9I | CCNGG | 2 cut(s) | 1054, 1158 |
| Mva1269I | GAATGC | 2 cut(s) | 1317, 1426 |
| MvaI | CCWGG | 1 cut(s) | 1158 |
| MvnI | CGCG | 1 cut(s) | 433 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 403, 776, 841, 1184, 1193 |
| NciI | CCSGG | 1 cut(s) | 1054 |
| NcoI | CCATGG | 1 cut(s) | 1228 |
| NdeI | CATATG | 1 cut(s) | 1613 |
| NdeII | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| NheI | GCTAGC | 1 cut(s) | 1400 |
| NlaIV | GGNNCC | 2 cut(s) | 633, 1035 |
| NmuCI | GTSAC | 2 cut(s) | 130, 1429 |
| NsiI | ATGCAT | 1 cut(s) | 1003 |
| NspI | RCATGY | 5 cut(s) | 352, 956, 1119, 1325, 1792 |
| OliI | CACNNNNGTG | 1 cut(s) | 670 |
| PaeI | GCATGC | 1 cut(s) | 1792 |
| PaeR7I | CTCGAG | 1 cut(s) | 1297 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PciI | ACATGT | 2 cut(s) | 348, 1115 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 202 |
| PctI | GAATGC | 2 cut(s) | 1317, 1426 |
| PdmI | GAANNNNTTC | 1 cut(s) | 542 |
| PfeI | GAWTC | 4 cut(s) | 463, 662, 822, 1084 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 59 |
| PinAI | ACCGGT | 1 cut(s) | 1774 |
| PkrI | GCNGC | 5 cut(s) | 757, 1180, 1450, 1966, 2050 |
| PleI | GAGTC | 1 cut(s) | 1647 |
| PpsI | GAGTC | 1 cut(s) | 1647 |
| PscI | ACATGT | 2 cut(s) | 348, 1115 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1578 |
| PsiI | TTATAA | 2 cut(s) | 254, 1994 |
| Psp124BI | GAGCTC | 1 cut(s) | 846 |
| Psp6I | CCWGG | 1 cut(s) | 1156 |
| PspEI | GGTNACC | 2 cut(s) | 130, 1929 |
| PspFI | CCCAGC | 1 cut(s) | 2078 |
| PspGI | CCWGG | 1 cut(s) | 1156 |
| PspN4I | GGNNCC | 2 cut(s) | 633, 1035 |
| PspPI | GGNCC | 3 cut(s) | 1580, 1712, 1772 |
| PspXI | VCTCGAGB | 1 cut(s) | 1297 |
| PstI | CTGCAG | 3 cut(s) | 477, 760, 1453 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1798, 2139 |
| PsuI | RGATCY | 3 cut(s) | 82, 513, 1561 |
| PvuII | CAGCTG | 2 cut(s) | 1307, 1481 |
| RsaI | GTAC | 4 cut(s) | 303, 1303, 1797, 2137 |
| RsaNI | GTAC | 4 cut(s) | 302, 1302, 1796, 2136 |
| RseI | CAYNNNNRTG | 6 cut(s) | 330, 670, 957, 1320, 1388, 1874 |
| SacI | GAGCTC | 1 cut(s) | 846 |
| SaqAI | TTAA | 8 cut(s) | 341, 731, 831, 1137, 1217, 1248, 1473, 1755 |
| SatI | GCNGC | 5 cut(s) | 756, 1179, 1449, 1965, 2049 |
| Sau3AI | GATC | 5 cut(s) | 73, 82, 513, 1561, 1983 |
| Sau96I | GGNCC | 3 cut(s) | 1580, 1712, 1772 |
| SchI | GAGTC | 1 cut(s) | 1647 |
| ScrFI | CCNGG | 2 cut(s) | 1054, 1158 |
| SduI | GDGCHC | 2 cut(s) | 846, 930 |
| SfaNI | GCATC | 5 cut(s) | 367, 603, 1010, 1387, 1399 |
| SfcI | CTRYAG | 4 cut(s) | 473, 756, 974, 1449 |
| Sfr274I | CTCGAG | 1 cut(s) | 1297 |
| SinI | GGWCC | 3 cut(s) | 1580, 1712, 1772 |
| SlaI | CTCGAG | 1 cut(s) | 1297 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 330, 670, 957, 1320, 1388, 1874 |
| SmlI | CTYRAG | 4 cut(s) | 443, 452, 1136, 1297 |
| SmoI | CTYRAG | 4 cut(s) | 443, 452, 1136, 1297 |
| SpeI | ACTAGT | 1 cut(s) | 1519 |
| SphI | GCATGC | 1 cut(s) | 1792 |
| SsiI | CCGC | 3 cut(s) | 431, 850, 1644 |
| SspMI | CTAG | 6 cut(s) | 114, 1338, 1401, 1520, 1650, 1973 |
| SstI | GAGCTC | 1 cut(s) | 846 |
| StyD4I | CCNGG | 2 cut(s) | 1052, 1156 |
| StyI | CCWWGG | 2 cut(s) | 485, 1228 |
| TaaI | ACNGT | 3 cut(s) | 260, 1800, 2135 |
| TaiI | ACGT | 5 cut(s) | 690, 817, 905, 1531, 1578 |
| TaqI | TCGA | 5 cut(s) | 948, 1166, 1298, 1638, 1684 |
| TaqII | GACCGA | 1 cut(s) | 428 |
| TatI | WGTACW | 1 cut(s) | 1301 |
| TfiI | GAWTC | 4 cut(s) | 463, 662, 822, 1084 |
| Tru1I | TTAA | 8 cut(s) | 341, 731, 831, 1137, 1217, 1248, 1473, 1755 |
| Tru9I | TTAA | 8 cut(s) | 341, 731, 831, 1137, 1217, 1248, 1473, 1755 |
| TscAI | CASTG | 3 cut(s) | 604, 1573, 1639 |
| TseFI | GTSAC | 2 cut(s) | 130, 1429 |
| TseI | GCWGC | 5 cut(s) | 755, 1178, 1448, 1964, 2048 |
| Tsp45I | GTSAC | 2 cut(s) | 130, 1429 |
| TspDTI | ATGAA | 9 cut(s) | 231, 348, 476, 631, 756, 777, 890, 2082, 2115 |
| TspGWI | ACGGA | 2 cut(s) | 506, 920 |
| TspRI | CASTG | 3 cut(s) | 604, 1573, 1639 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 59 |
| Vha464I | CTTAAG | 1 cut(s) | 1136 |
| VpaK11BI | GGWCC | 3 cut(s) | 1580, 1712, 1772 |
| XapI | RAATTY | 4 cut(s) | 241, 653, 1702, 1764 |
| XceI | RCATGY | 5 cut(s) | 352, 956, 1119, 1325, 1792 |
| XhoI | CTCGAG | 1 cut(s) | 1297 |
| XmiI | GTMKAC | 1 cut(s) | 1888 |
| XmnI | GAANNNNTTC | 1 cut(s) | 542 |
| XspI | CTAG | 6 cut(s) | 114, 1338, 1401, 1520, 1650, 1973 |
| Zsp2I | ATGCAT | 1 cut(s) | 1003 |