Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004376.1

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Forward (+)

60732 .. 67267

Gene Structure 6536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004376.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgatcttactgcagatgttcccaattgcagttgcctgtgggaatacttttatcctaaagccatcagaaaaagatccaggtgcttctgtactgctagcagagttggcaatggaggctggtttgcctgatggtgtcttaaatattgttcacggaaccaatgatattgttaatgcaatttgtgatgatgatgatatcagagctgtatcatttgtgggttctaatacagctggcatgcacatatattcaagagcatcagctaaagggaaacgcgttcagtccaatatgggggcaaaaaatcatgggattgtcatgcctgatgcaagtcctgatgctactttgagtgctctagttgccgctggttttggtgctgcaggacagaggtgcatggcactcagcacagttgttttcgttggaggttcaaagtcatgggagaataaacttgtggagtacggaaaatcactgaaagtaagttcaggaacagaacctgatgctgaccttggtcctgtgattagcaagcaagccaaggagcgcatatgcaatctaatccaatctggtgttgaaagtggtgccaagctattgctggatgggcgagatatagtggtcccaggttatgagcatggcaattttattggccctactatcttatcaaatgttacagctgacatggagtgctacaaggaagaaatttttggtccagttcttctttgcttggaggctgacagtctagaagaggcaataagcattattaacagaaacagatatggcaatggcgcttctatatttactacatctggggtagctgctaggaaatttcagacggagattgaggctgggcaggttggtatcaacgttcctattccagttcccttgccctttttctcatttactggcagcaaggcatcttttgcaggggatttgaacttctatggcaaggcaggtgttaactttttcacccagatcaaaacagtaacccagcagtggaaaagtttaccaggcagcaatgtagttaatcttgccatgccaacttctcaaaaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

346

Amino Acids

36.45

Weight (kDa)

5.49

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	926
Acc36I	ACCTGC	2 cut(s)	826, 926
AccB1I	GGYRCC	1 cut(s)	566
AccII	CGCG	1 cut(s)	270
AciI	CCGC	1 cut(s)	354
AclI	AACGTT	1 cut(s)	849
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	684, 809
AfaI	GTAC	2 cut(s)	90, 449
AfiI	CCNNNNNNNGG	2 cut(s)	285, 978
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	246, 420, 560, 919
AjnI	CCWGG	3 cut(s)	76, 604, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	6 cut(s)	200, 227, 257, 574, 659, 800
AluI	AGCT	6 cut(s)	200, 227, 257, 574, 659, 800
Alw21I	GWGCWC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	4 cut(s)	368, 800, 891, 996
ApoI	RAATTY	2 cut(s)	684, 809
AspLEI	GCGC	2 cut(s)	531, 773
AspS9I	GGNCC	4 cut(s)	500, 601, 632, 692
AsuHPI	GGTGA	1 cut(s)	943
AsuNHI	GCTAGC	1 cut(s)	94
AvaII	GGWCC	3 cut(s)	500, 601, 692
BanI	GGYRCC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	355, 787, 903, 1008
BccI	CCATC	3 cut(s)	70, 122, 578
BciT130I	CCWGG	3 cut(s)	78, 606, 993
BfaI	CTAG	4 cut(s)	95, 347, 725, 804
BfmI	CTRYAG	2 cut(s)	11, 369
BfoI	RGCGCY	1 cut(s)	774
BfuAI	ACCTGC	2 cut(s)	826, 926
BisI	GCNGC	5 cut(s)	354, 369, 801, 892, 997
BlsI	GCNGC	5 cut(s)	355, 370, 802, 893, 998
Bme1390I	CCNGG	3 cut(s)	78, 606, 993
Bme18I	GGWCC	3 cut(s)	500, 601, 692
BmgT120I	GGNCC	4 cut(s)	500, 601, 632, 692
BmiI	GGNNCC	3 cut(s)	154, 568, 603
BmrFI	CCNGG	3 cut(s)	78, 606, 993
BmsI	GCATC	5 cut(s)	260, 307, 319, 478, 908
BmtI	GCTAGC	1 cut(s)	98
BoxI	GACNNNNGTC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	496, 522, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 978
Bse1I	ACTGG	3 cut(s)	695, 860, 892
Bse3DI	GCAATG	3 cut(s)	114, 772, 1006
BseBI	CCWGG	3 cut(s)	78, 606, 993
BseDI	CCNNGG	3 cut(s)	496, 522, 604
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	285, 978
BseMI	GCAATG	3 cut(s)	114, 772, 1006
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	3 cut(s)	695, 860, 892
BseXI	GCAGC	4 cut(s)	355, 787, 903, 1008
BseYI	CCCAGC	2 cut(s)	830, 972
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	633
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	285, 978
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	633
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	3, 73, 957
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	154, 568, 603
BspMAI	CTGCAG	2 cut(s)	15, 373
BspMI	ACCTGC	2 cut(s)	826, 926
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	566
BsrDI	GCAATG	3 cut(s)	114, 772, 1006
BsrI	ACTGG	3 cut(s)	695, 860, 892
BssECI	CCNNGG	3 cut(s)	496, 522, 604
BssMI	GATC	3 cut(s)	3, 73, 957
BssT1I	CCWWGG	2 cut(s)	496, 522
Bst2UI	CCWGG	3 cut(s)	78, 606, 993
Bst4CI	ACNGT	3 cut(s)	400, 722, 967
Bst6I	CTCTTC	1 cut(s)	723
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstC8I	GCNNGC	5 cut(s)	96, 229, 233, 515, 519
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	2 cut(s)	531, 773
BstKTI	GATC	3 cut(s)	6, 76, 960
BstMBI	GATC	3 cut(s)	3, 73, 957
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 113, 350, 586, 905
BstNI	CCWGG	3 cut(s)	78, 606, 993
BstNSI	RCATGY	1 cut(s)	235
BstPAI	GACNNNNGTC	1 cut(s)	498
BstSCI	CCNGG	3 cut(s)	76, 604, 991
BstSFI	CTRYAG	2 cut(s)	11, 369
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	355, 787, 903, 1008
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	983
BtsIMutI	CAGTG	2 cut(s)	458, 983
BveI	ACCTGC	2 cut(s)	826, 926
Cac8I	GCNNGC	5 cut(s)	96, 229, 233, 515, 519
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	2 cut(s)	531, 773
Cfr13I	GGNCC	4 cut(s)	500, 601, 632, 692
Csp6I	GTAC	2 cut(s)	89, 448
CviAII	CATG	8 cut(s)	232, 299, 310, 385, 426, 617, 664, 1018
CviQI	GTAC	2 cut(s)	89, 448
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	3 cut(s)	5, 75, 959
DpnII	GATC	3 cut(s)	3, 73, 957
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Eco130I	CCWWGG	2 cut(s)	496, 522
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	500, 601, 692
EcoRII	CCWGG	3 cut(s)	76, 604, 991
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	496, 522
ErhI	CCWWGG	2 cut(s)	496, 522
FaeI	CATG	8 cut(s)	235, 302, 313, 388, 429, 620, 667, 1021
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	8 cut(s)	231, 298, 309, 384, 425, 616, 663, 1017
FauNDI	CATATG	1 cut(s)	533
Fnu4HI	GCNGC	5 cut(s)	354, 369, 801, 892, 997
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	5 cut(s)	354, 369, 801, 892, 997
FspBI	CTAG	4 cut(s)	95, 347, 725, 804
GlaI	GCGC	2 cut(s)	530, 772
GluI	GCNGC	5 cut(s)	354, 369, 801, 892, 997
GsaI	CCCAGC	2 cut(s)	834, 976
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	633
HhaI	GCGC	2 cut(s)	531, 773
Hin1II	CATG	8 cut(s)	235, 302, 313, 388, 429, 620, 667, 1021
Hin6I	GCGC	2 cut(s)	529, 771
HinP1I	GCGC	2 cut(s)	529, 771
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HpaI	GTTAAC	1 cut(s)	943
HphI	GGTGA	1 cut(s)	943
Hpy166II	GTNNAC	3 cut(s)	148, 943, 989
Hpy188I	TCNGA	3 cut(s)	67, 197, 816
Hpy188III	TCNNGA	4 cut(s)	246, 326, 474, 725
Hpy8I	GTNNAC	3 cut(s)	148, 943, 989
HpyCH4III	ACNGT	3 cut(s)	400, 722, 967
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	9 cut(s)	13, 29, 173, 235, 320, 371, 384, 537, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 113, 350, 586, 905
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	849
Hsp92II	CATG	8 cut(s)	235, 302, 313, 388, 429, 620, 667, 1021
HspAI	GCGC	2 cut(s)	529, 771
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	3 cut(s)	3, 73, 957
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	4 cut(s)	355, 787, 903, 1008
LweI	GCATC	5 cut(s)	260, 307, 319, 478, 908
MaeI	CTAG	4 cut(s)	95, 347, 725, 804
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	2 cut(s)	652, 967
MalI	GATC	3 cut(s)	5, 75, 959
MboI	GATC	3 cut(s)	3, 73, 957
MboII	GAAGA	3 cut(s)	692, 692, 740
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	5 cut(s)	24, 174, 622, 684, 809
MluI	ACGCGT	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	106, 372, 407, 706, 724, 820
MseI	TTAA	5 cut(s)	137, 168, 747, 942, 1008
MspA1I	CMGCKG	3 cut(s)	227, 356, 659
MspR9I	CCNGG	3 cut(s)	78, 606, 993
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	3 cut(s)	78, 606, 993
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	5 cut(s)	104, 113, 350, 586, 905
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	3 cut(s)	3, 73, 957
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	8 cut(s)	235, 302, 313, 388, 429, 620, 667, 1021
NlaIV	GGNNCC	3 cut(s)	154, 568, 603
NspI	RCATGY	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	926
PkrI	GCNGC	5 cut(s)	355, 370, 802, 893, 998
PshAI	GACNNNNGTC	1 cut(s)	498
Psp1406I	AACGTT	1 cut(s)	849
Psp6I	CCWGG	3 cut(s)	76, 604, 991
PspFI	CCCAGC	2 cut(s)	830, 972
PspGI	CCWGG	3 cut(s)	76, 604, 991
PspN4I	GGNNCC	3 cut(s)	154, 568, 603
PspPI	GGNCC	4 cut(s)	500, 601, 632, 692
PstI	CTGCAG	2 cut(s)	15, 373
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	2 cut(s)	227, 659
RsaI	GTAC	2 cut(s)	90, 449
RsaNI	GTAC	2 cut(s)	89, 448
SaqAI	TTAA	5 cut(s)	137, 168, 747, 942, 1008
SatI	GCNGC	5 cut(s)	354, 369, 801, 892, 997
Sau3AI	GATC	3 cut(s)	3, 73, 957
Sau96I	GGNCC	4 cut(s)	500, 601, 632, 692
ScrFI	CCNGG	3 cut(s)	78, 606, 993
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	5 cut(s)	260, 307, 319, 478, 908
SfcI	CTRYAG	2 cut(s)	11, 369
SinI	GGWCC	3 cut(s)	500, 601, 692
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	5 cut(s)	24, 174, 622, 684, 809
SsiI	CCGC	1 cut(s)	354
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	4 cut(s)	95, 347, 725, 804
StyD4I	CCNGG	3 cut(s)	76, 604, 991
StyI	CCWWGG	2 cut(s)	496, 522
TaaI	ACNGT	3 cut(s)	400, 722, 967
TaiI	ACGT	1 cut(s)	852
TasI	AATT	5 cut(s)	24, 174, 622, 684, 809
TatI	WGTACW	1 cut(s)	88
TauI	GCSGC	1 cut(s)	356
Tru1I	TTAA	5 cut(s)	137, 168, 747, 942, 1008
Tru9I	TTAA	5 cut(s)	137, 168, 747, 942, 1008
TscAI	CASTG	2 cut(s)	465, 983
TseI	GCWGC	4 cut(s)	368, 800, 891, 996
TspGWI	ACGGA	3 cut(s)	165, 465, 833
TspRI	CASTG	2 cut(s)	465, 983
VpaK11BI	GGWCC	3 cut(s)	500, 601, 692
XapI	RAATTY	2 cut(s)	684, 809
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XspI	CTAG	4 cut(s)	95, 347, 725, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.