Rh2DG410100
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000503
Physical Location & Seq
Reverse (-)
59489392 .. 59491704
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG410100.1

Sequence Viewer

Length: 654 bp
ATGGTCATATGGAACATTCGGATGATAAAGAGGTACAAAACCAAGATTCCCGGCGAGACTGTTAAAAGAATTGAGGATGAGGTTTTAGATTTGAGAAAAGCAAGTAGAGGAAGGAGTGTTTTTAGGGAACCAAAATCCAAGATGGACGAGAACTTGGCATGTCGAAATGACTCTGTTGTATGGGGATCACATGGGGATCAGTTTAGTAGTGATGATGAGCAGGGTGGCGGGTACTTTGGAGGTGAAGCTTCTTGGGATCAGTCTGGCTCAGACATCCCCATTATGAACAAGATCTTAGAGGAGCACAGAGACAAGATTCCAAGTGACCTGGCTAGAGAAGTTGAGGCTGCAATTATAGATTTGCAGAAGGCAACGGAAGGGGGTAATGCTGATGAGATTAATGCGAAGCTTGACGATGCCAGCAAAGCTGTCTCAAAGATTGGGGAGCACATGTACCGGGGCCCTGATTCTGATGATGACTCTGTTGGTGACCAAGATCCCGCTGGTTGTCTCAATGATGGGGAATACCATGAAGGCGAGGCTTCTAAAAATGATCCTGAAGCTTTTGGCGCTGGCTCTAACACGCATGGTGGCGGCTTTGATAATTTTGACAATCACTGTGATGATTACTCGTGTGGTGGTGGTGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko05152 map03018 map04212 map05152
Pfam Domains
Protein Families
HSP70

Protein Analysis

217

Amino Acids

23.75

Weight (kDa)

4.53

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 228, 501, 594
AclWI GGATC 5 cut(s) 193, 204, 264, 491, 548
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 3 cut(s) 35, 233, 455
AflIII ACRYGT 1 cut(s) 450
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 4 cut(s) 248, 409, 428, 563
AluI AGCT 4 cut(s) 248, 409, 428, 563
Alw21I GWGCWC 2 cut(s) 306, 450
Alw26I GTCTC 4 cut(s) 50, 303, 436, 515
AlwI GGATC 5 cut(s) 193, 204, 264, 491, 548
AoxI GGCC 1 cut(s) 460
ApaI GGGCCC 1 cut(s) 464
ApeKI GCWGC 1 cut(s) 347
AseI ATTAAT 1 cut(s) 399
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 460, 461
AsuC2I CCSGG 2 cut(s) 51, 458
AsuHPI GGTGA 2 cut(s) 254, 500
BaeGI GKGCMC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 464
BauI CACGAG 1 cut(s) 631
Bbv12I GWGCWC 2 cut(s) 306, 450
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 136, 512
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 2 cut(s) 51, 458
BcoDI GTCTC 4 cut(s) 50, 303, 436, 515
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 573
BglII AGATCT 1 cut(s) 291
BisI GCNGC 2 cut(s) 348, 595
BlsI GCNGC 2 cut(s) 349, 596
Bme1390I CCNGG 3 cut(s) 51, 329, 458
BmgT120I GGNCC 2 cut(s) 460, 461
BmiI GGNNCC 3 cut(s) 129, 461, 462
BmrFI CCNGG 3 cut(s) 51, 329, 458
BmsI GCATC 1 cut(s) 406
BpuMI CCSGG 2 cut(s) 51, 458
BsaJI CCNNGG 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 3 cut(s) 27, 82, 273
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 1 cut(s) 334
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 2 cut(s) 306, 450
BsiSI CCGG 2 cut(s) 51, 457
BsmAI GTCTC 4 cut(s) 50, 303, 436, 515
BsnI GGCC 1 cut(s) 462
Bsp120I GGGCCC 1 cut(s) 460
Bsp1286I GDGCHC 3 cut(s) 306, 450, 464
Bsp143I GATC 6 cut(s) 185, 196, 256, 291, 496, 553
BspACI CCGC 3 cut(s) 228, 501, 594
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 3 cut(s) 129, 461, 462
BspPI GGATC 5 cut(s) 193, 204, 264, 491, 548
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 6 cut(s) 185, 196, 256, 291, 496, 553
BssSI CACGAG 1 cut(s) 631
Bst2BI CACGAG 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 61, 620
BstC8I GCNNGC 2 cut(s) 421, 574
BstDEI CTNAG 2 cut(s) 268, 295
BstEII GGTNACC 1 cut(s) 488
BstF5I GGATG 3 cut(s) 27, 82, 273
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 6 cut(s) 188, 199, 259, 294, 499, 556
BstMAI GTCTC 4 cut(s) 50, 303, 436, 515
BstMBI GATC 6 cut(s) 185, 196, 256, 291, 496, 553
BstMWI GCNNNNNNNGC 2 cut(s) 425, 569
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 2 cut(s) 162, 454
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 3 cut(s) 49, 327, 456
BstSLI GKGCMC 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 2 cut(s) 291, 496
BstYI RGATCY 2 cut(s) 291, 496
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 3 cut(s) 27, 82, 273
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 421, 574
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 460, 461
Csp6I GTAC 3 cut(s) 34, 232, 454
CviAII CATG 5 cut(s) 159, 191, 451, 530, 587
CviQI GTAC 3 cut(s) 34, 232, 454
DdeI CTNAG 2 cut(s) 268, 295
DpnI GATC 6 cut(s) 187, 198, 258, 293, 498, 555
DpnII GATC 6 cut(s) 185, 196, 256, 291, 496, 553
Eco24I GRGCYC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 579
Eco91I GGTNACC 1 cut(s) 488
EcoO109I RGGNCCY 2 cut(s) 460, 461
EcoO65I GGTNACC 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 464
FaeI CATG 5 cut(s) 162, 194, 454, 533, 590
FatI CATG 5 cut(s) 158, 190, 450, 529, 586
FauI CCCGC 2 cut(s) 221, 508
FauNDI CATATG 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 348, 595
FokI GGATG 3 cut(s) 34, 89, 260
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 2 cut(s) 348, 595
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 571
GluI GCNGC 2 cut(s) 348, 595
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 1 cut(s) 462
HapII CCGG 2 cut(s) 51, 457
HhaI GCGC 1 cut(s) 572
Hin1II CATG 5 cut(s) 162, 194, 454, 533, 590
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HindIII AAGCTT 3 cut(s) 246, 407, 561
HinfI GANTC 5 cut(s) 46, 170, 316, 467, 479
HpaII CCGG 2 cut(s) 51, 457
HphI GGTGA 2 cut(s) 254, 500
Hpy188I TCNGA 3 cut(s) 21, 271, 472
Hpy188III TCNNGA 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 105, 361, 371, 527
HpyCH4III ACNGT 2 cut(s) 61, 620
HpyCH4V TGCA 2 cut(s) 350, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 569
HpyF3I CTNAG 2 cut(s) 268, 295
Hsp92II CATG 5 cut(s) 162, 194, 454, 533, 590
HspAI GCGC 1 cut(s) 570
Kzo9I GATC 6 cut(s) 185, 196, 256, 291, 496, 553
LmnI GCTCC 2 cut(s) 301, 445
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 323, 488
MalI GATC 6 cut(s) 187, 198, 258, 293, 498, 555
MboI GATC 6 cut(s) 185, 196, 256, 291, 496, 553
MflI RGATCY 2 cut(s) 291, 496
MhlI GDGCHC 3 cut(s) 306, 450, 464
MluCI AATT 3 cut(s) 69, 351, 604
MlyI GAGTC 2 cut(s) 164, 473
MnlI CCTC 8 cut(s) 24, 67, 73, 101, 233, 292, 337, 532
MseI TTAA 2 cut(s) 63, 399
MslI CAYNNNNRTG 2 cut(s) 20, 621
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 51, 457
MspR9I CCNGG 3 cut(s) 51, 329, 458
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 425, 569
NciI CCSGG 2 cut(s) 51, 458
NdeI CATATG 1 cut(s) 8
NdeII GATC 6 cut(s) 185, 196, 256, 291, 496, 553
NlaIII CATG 5 cut(s) 162, 194, 454, 533, 590
NlaIV GGNNCC 3 cut(s) 129, 461, 462
NmuCI GTSAC 2 cut(s) 323, 488
NspI RCATGY 2 cut(s) 162, 454
PciI ACATGT 1 cut(s) 450
PfeI GAWTC 3 cut(s) 46, 316, 467
PkrI GCNGC 2 cut(s) 349, 596
PleI GAGTC 2 cut(s) 164, 473
PpsI GAGTC 2 cut(s) 164, 473
PscI ACATGT 1 cut(s) 450
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 327
PspEI GGTNACC 1 cut(s) 488
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 129, 461, 462
PspOMI GGGCCC 1 cut(s) 460
PspPI GGNCC 2 cut(s) 460, 461
PsuI RGATCY 2 cut(s) 291, 496
RsaI GTAC 3 cut(s) 35, 233, 455
RsaNI GTAC 3 cut(s) 34, 232, 454
RseI CAYNNNNRTG 2 cut(s) 20, 621
SaqAI TTAA 2 cut(s) 63, 399
SatI GCNGC 2 cut(s) 348, 595
Sau3AI GATC 6 cut(s) 185, 196, 256, 291, 496, 553
Sau96I GGNCC 2 cut(s) 460, 461
SchI GAGTC 2 cut(s) 164, 473
ScrFI CCNGG 3 cut(s) 51, 329, 458
SduI GDGCHC 3 cut(s) 306, 450, 464
SetI ASST 8 cut(s) 35, 84, 244, 250, 330, 411, 430, 565
SfaNI GCATC 1 cut(s) 406
SmiMI CAYNNNNRTG 2 cut(s) 20, 621
Sse9I AATT 3 cut(s) 69, 351, 604
SsiI CCGC 3 cut(s) 228, 501, 594
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 3 cut(s) 49, 327, 456
TaaI ACNGT 2 cut(s) 61, 620
TaqI TCGA 1 cut(s) 163
TasI AATT 3 cut(s) 69, 351, 604
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 3 cut(s) 46, 316, 467
Tru1I TTAA 2 cut(s) 63, 399
Tru9I TTAA 2 cut(s) 63, 399
TscAI CASTG 1 cut(s) 623
TseFI GTSAC 2 cut(s) 323, 488
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 323, 488
TspDTI ATGAA 2 cut(s) 299, 546
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 1 cut(s) 623
VspI ATTAAT 1 cut(s) 399
XceI RCATGY 2 cut(s) 162, 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.