Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Reverse (-)

7323383 .. 7324909

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0052100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTGAGAGAGAACAGCAGCACCAGGGTGATGCACAGATGCAATCTCCAAAGGATGACATGGTGGCATTTGTGATGGCATTGGAGGCTGCTTTGCTTCCATGCTTGCCTGCCAGAGAGCTTCAAGCAATAGACCGTTCACCGCACCCGTCTCATCAGATTGATGTTGAGAGACATGCCAGAGATTTTATGAAAGCTGCCAAAAAGCTTCAGCTCTATTTTATTGGTCTGCAACGTGAGGATCTGCCCACGAATGCTGAAAAACTCAGAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAAGGTAAAGAATGAGATTATCAAGAAGAATGAAAGGTTAATCCAAGGGTGGAAAAAGGAGCTGAAAGACCAATTGGACAGACACAATACTGAGCTCGAGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

135

Amino Acids

15.78

Weight (kDa)

6.22

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med28	PF11594	24 - 121	6.1e-23	Mediator complex subunit 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	125, 301
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AleI	CACNNNNGTG	1 cut(s)	27
AluBI	AGCT	6 cut(s)	121, 197, 208, 214, 361, 394
AluI	AGCT	6 cut(s)	121, 197, 208, 214, 361, 394
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	156, 166
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	395
ApeKI	GCWGC	3 cut(s)	19, 89, 197
AsuHPI	GGTGA	2 cut(s)	41, 132
AvaI	CYCGRG	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	31, 76, 184
BccI	CCATC	2 cut(s)	70, 280
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	156, 166
BisI	GCNGC	3 cut(s)	20, 90, 198
BlsI	GCNGC	3 cut(s)	21, 91, 199
Bme1390I	CCNGG	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	22, 30
BsaJI	CCNNGG	2 cut(s)	25, 343
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	25, 343
BseGI	GGATG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	280, 381
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	31, 76, 184
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	156, 166
BsmBI	CGTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	279, 382
BspPI	GGATC	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	25, 343
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	107, 111
BstDEI	CTNAG	3 cut(s)	6, 266, 390
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	156, 166
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	31, 76, 184
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	107, 111
CviAII	CATG	3 cut(s)	61, 102, 176
CviJI	RGCY	8 cut(s)	5, 89, 121, 197, 208, 214, 361, 394
CviKI_1	RGCY	8 cut(s)	5, 89, 121, 197, 208, 214, 361, 394
DdeI	CTNAG	3 cut(s)	6, 266, 390
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	3 cut(s)	64, 105, 179
FaiI	YATR	4 cut(s)	62, 103, 177, 191
FatI	CATG	3 cut(s)	60, 101, 175
Fnu4HI	GCNGC	3 cut(s)	20, 90, 198
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	3 cut(s)	20, 90, 198
GluI	GCNGC	3 cut(s)	20, 90, 198
Hin1II	CATG	3 cut(s)	64, 105, 179
HindIII	AAGCTT	1 cut(s)	206
HphI	GGTGA	2 cut(s)	41, 132
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	159, 269
Hpy188III	TCNNGA	2 cut(s)	322, 397
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	35, 43, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	6, 266, 390
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	3 cut(s)	64, 105, 179
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	5 cut(s)	11, 38, 123, 127, 193
Lsp1109I	GCAGC	3 cut(s)	31, 76, 184
LweI	GCATC	2 cut(s)	22, 30
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	302, 337
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	1 cut(s)	371
MnlI	CCTC	3 cut(s)	79, 232, 286
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	64, 105, 179
NspI	RCATGY	1 cut(s)	179
OliI	CACNNNNGTG	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	395
PctI	GAATGC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	21, 91, 199
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	3 cut(s)	20, 90, 198
Sau3AI	GATC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	9 cut(s)	123, 199, 210, 216, 238, 306, 338, 363, 396
SfaNI	GCATC	2 cut(s)	22, 30
Sfr274I	CTCGAG	1 cut(s)	395
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	396
TasI	AATT	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseI	GCWGC	3 cut(s)	19, 89, 197
TspDTI	ATGAA	2 cut(s)	206, 345
XceI	RCATGY	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.