Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Reverse (-)

57847501 .. 57853258

Gene Structure 5758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG387200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCACCGCAGCATTGCTCCGTTCGCTATGCTGTCGTGATGTTGCAACCGCCTCCCTCTCTGCCTACCGCTCTTTGAATAGCACCGTCAAGTCCTCGGTTCAGGGTCACCACTGGGTAAGCTTGGCAAGACCTTTTAGGGGATTGACTCGGTCACCATCGGCGAGACACGCGAATCCCTTGTACTATCTTCTCTCAACCCAGGCTGGCATGCACATATTTTCAAGAGCATCAGCTAAAGGGAAACACGTTCAGTCAAATATGGGGGCTAAGAACCATGCAATTGTGATGCCTGATGCAAGTCCTGATGCCACTTTGAATGGTTTAGTTGCCGCTGGTTTTGGTGCTGCAGGACAAAGTGCTGGAACAGAACCTGATGCTGACATTGGCCCTGTAATTAGCGAGCAAGCAAAGGAACGGATATGCAAATTAATCCAATCTGGTGTTGAAAGTGGTGCTAGGCTATTGCTTGATGGGAGAAATATAGTGGTCCCAGGATATGAGCATGGAAATTTAATTGGTCCGACCATCTTATCAAATGTCACGGCTGACATGGAGTGCTACAAGTTGCAGCTGCTACTGACAGGAGACAACTTCTGTGATATAAGATTAAGATTTATGTACTGCCACGAGCCTCCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

214

Amino Acids

22.86

Weight (kDa)

8.79

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	66 - 120	6.7e-09	Aldehyde dehydrogenase family
Aldedh	PF00171	123 - 189	1e-13	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	173
AciI	CCGC	4 cut(s)	9, 51, 70, 333
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	2 cut(s)	185, 623
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	79, 225, 319, 449
AjnI	CCWGG	2 cut(s)	201, 493
AluBI	AGCT	3 cut(s)	123, 236, 574
AluI	AGCT	3 cut(s)	123, 236, 574
Alw26I	GTCTC	2 cut(s)	160, 582
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	3, 388
ApeKI	GCWGC	4 cut(s)	11, 347, 571, 574
ApoI	RAATTY	1 cut(s)	511
AseI	ATTAAT	1 cut(s)	431
AspS9I	GGNCC	3 cut(s)	389, 490, 521
AsuHPI	GGTGA	2 cut(s)	101, 147
AvaII	GGWCC	2 cut(s)	490, 521
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	629
BbvI	GCAGC	4 cut(s)	23, 334, 561, 583
BccI	CCATC	3 cut(s)	166, 467, 536
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	2 cut(s)	203, 495
BcoDI	GTCTC	2 cut(s)	160, 582
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	5 cut(s)	12, 333, 348, 572, 575
BlsI	GCNGC	5 cut(s)	13, 334, 349, 573, 576
Bme1390I	CCNGG	2 cut(s)	203, 495
Bme18I	GGWCC	2 cut(s)	490, 521
BmgT120I	GGNCC	3 cut(s)	389, 490, 521
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	203, 495
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	5 cut(s)	239, 279, 286, 298, 367
BmuI	ACTGGG	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	96, 201, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	203, 495
BseDI	CCNNGG	3 cut(s)	96, 201, 493
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	23, 334, 561, 583
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	5, 390
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	160, 582
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	5, 390
BspACI	CCGC	4 cut(s)	9, 51, 70, 333
BspANI	GGCC	2 cut(s)	5, 390
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	492
BspMAI	CTGCAG	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	96, 201, 493
BssSI	CACGAG	1 cut(s)	629
Bst2BI	CACGAG	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	203, 495
Bst4CI	ACNGT	1 cut(s)	88
BstC8I	GCNNGC	4 cut(s)	208, 212, 404, 408
BstDEI	CTNAG	1 cut(s)	270
BstEII	GGTNACC	2 cut(s)	107, 153
BstFNI	CGCG	1 cut(s)	173
BstMAI	GTCTC	2 cut(s)	160, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 25, 170
BstNI	CCWGG	2 cut(s)	203, 495
BstNSI	RCATGY	1 cut(s)	214
BstPI	GGTNACC	2 cut(s)	107, 153
BstSCI	CCNGG	2 cut(s)	201, 493
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	23, 334, 561, 583
BsuRI	GGCC	2 cut(s)	5, 390
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	4 cut(s)	208, 212, 404, 408
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	3 cut(s)	389, 490, 521
Csp6I	GTAC	2 cut(s)	184, 622
CviAII	CATG	4 cut(s)	211, 278, 506, 553
CviQI	GTAC	2 cut(s)	184, 622
DdeI	CTNAG	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	490, 521
Eco91I	GGTNACC	2 cut(s)	107, 153
EcoO65I	GGTNACC	2 cut(s)	107, 153
EcoRII	CCWGG	2 cut(s)	201, 493
FaeI	CATG	4 cut(s)	214, 281, 509, 556
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	4 cut(s)	210, 277, 505, 552
Fnu4HI	GCNGC	5 cut(s)	12, 333, 348, 572, 575
Fsp4HI	GCNGC	5 cut(s)	12, 333, 348, 572, 575
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	5 cut(s)	12, 333, 348, 572, 575
HaeIII	GGCC	2 cut(s)	5, 390
Hin1II	CATG	4 cut(s)	214, 281, 509, 556
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	2 cut(s)	148, 175
HphI	GGTGA	2 cut(s)	101, 147
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	3 cut(s)	38, 225, 305
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	7 cut(s)	47, 214, 281, 299, 350, 426, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 25, 170
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	214, 281, 509, 556
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	4 cut(s)	23, 334, 561, 583
LweI	GCATC	5 cut(s)	239, 279, 286, 298, 367
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	3 cut(s)	107, 153, 541
MbiI	CCGCTC	1 cut(s)	72
MboII	GAAGA	1 cut(s)	182
MfeI	CAATTG	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	282, 396, 428, 511, 516
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	4 cut(s)	64, 68, 106, 645
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	431, 515, 611
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	335, 574
MspR9I	CCNGG	2 cut(s)	203, 495
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	203, 495
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	11, 25, 170
NlaIII	CATG	4 cut(s)	214, 281, 509, 556
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	3 cut(s)	107, 153, 541
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	175
PflFI	GACNNNGTC	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	13, 334, 349, 573, 576
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	201, 493
PspEI	GGTNACC	2 cut(s)	107, 153
PspGI	CCWGG	2 cut(s)	201, 493
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	3 cut(s)	389, 490, 521
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	374
PsyI	GACNNNGTC	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	2 cut(s)	185, 623
RsaNI	GTAC	2 cut(s)	184, 622
SaqAI	TTAA	3 cut(s)	431, 515, 611
SatI	GCNGC	5 cut(s)	12, 333, 348, 572, 575
Sau96I	GGNCC	3 cut(s)	389, 490, 521
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	203, 495
SetI	ASST	6 cut(s)	125, 136, 238, 252, 376, 576
SfaNI	GCATC	5 cut(s)	239, 279, 286, 298, 367
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	2 cut(s)	490, 521
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	5 cut(s)	282, 396, 428, 511, 516
SsiI	CCGC	4 cut(s)	9, 51, 70, 333
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	201, 493
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	282, 396, 428, 511, 516
TatI	WGTACW	2 cut(s)	183, 621
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	431, 515, 611
Tru9I	TTAA	3 cut(s)	431, 515, 611
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	3 cut(s)	107, 153, 541
TseI	GCWGC	4 cut(s)	11, 347, 571, 574
Tsp45I	GTSAC	3 cut(s)	107, 153, 541
TspGWI	ACGGA	2 cut(s)	11, 433
TspRI	CASTG	1 cut(s)	119
Tth111I	GACNNNGTC	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	490, 521
VspI	ATTAAT	1 cut(s)	431
XapI	RAATTY	1 cut(s)	511
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.