Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Forward (+)

24376964 .. 24382652

Gene Structure 5689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTCAAGTTCCAAGAGCTTATACGCAGAGACATTGATAAGATTGCTATGACCATTACAAGTGAACATGGCAAAGCATTGAAGGATGCATATGATGATGTCTCACGTGGGCTAGAGGTGGTCCAACATGCTTGTGGACTTGCAACTCGCAGATGGGAGATTTTATTTCCAATGTATCACATGGAATTGATAGCTACAGCATTAGGGAGCCACTTGGTGTTTGTGCTGGGATTTGCCCATAGTTGGCAATGGAGGCCTGGCTTGCCAAGTGGGGTGTTAAATATTGTTCATGGCACCGATGAAACTTTTGATGCTATTTGTGATGATGATGACATTAAAGCCATCTCATTTGTTGGAACAAAAGCAGCAGGTGCTTACATTTATTCCCGAGCATCGGCTAAGGGGAAACGTATTCAGAACCAACTCACCACCATCGACCAAAACTCGGACTCGGACGACTCGGCAGTCTTCGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

5.45

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	86 - 141	9.3e-11	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	293
AcvI	CACGTG	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	217
AfiI	CCNNNNNNNGG	3 cut(s)	243, 394, 445
AgsI	TTSAA	2 cut(s)	7, 82
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	19, 194
AluI	AGCT	2 cut(s)	19, 194
Alw26I	GTCTC	2 cut(s)	24, 106
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	293
BbrPI	CACGTG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	3 cut(s)	147, 350, 440
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	24, 106
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	209, 295
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	3 cut(s)	76, 301, 401
BpiI	GAAGAC	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 394, 445
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	243, 394, 445
BseMI	GCAATG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	243, 394, 445
BsmAI	GTCTC	2 cut(s)	24, 106
BsnI	GGCC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	387
BspANI	GGCC	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	209, 295
BspMI	ACCTGC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	24, 106
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 262, 371
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	121
CviAII	CATG	4 cut(s)	68, 128, 181, 290
CviJI	RGCY	8 cut(s)	19, 112, 194, 210, 256, 261, 341, 398
CviKI_1	RGCY	8 cut(s)	19, 112, 194, 210, 256, 261, 341, 398
DdeI	CTNAG	1 cut(s)	399
DraIII	CACNNNGTG	1 cut(s)	217
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eco147I	AGGCCT	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	121
Eco72I	CACGTG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	91
FaeI	CATG	4 cut(s)	71, 131, 184, 293
FaiI	YATR	9 cut(s)	23, 50, 69, 91, 93, 129, 182, 240, 291
FatI	CATG	4 cut(s)	67, 127, 180, 289
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	256
Hin1II	CATG	4 cut(s)	71, 131, 184, 293
HinfI	GANTC	2 cut(s)	449, 458
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	2 cut(s)	65, 137
Hpy188I	TCNGA	3 cut(s)	417, 448, 454
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	2 cut(s)	65, 137
HpyAV	CCTTC	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	106, 409
HpyCH4V	TGCA	2 cut(s)	89, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 262, 371
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	106, 409
Hsp92II	CATG	4 cut(s)	71, 131, 184, 293
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	4 cut(s)	212, 243, 270, 354
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	3 cut(s)	76, 301, 401
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	2 cut(s)	106, 409
MboII	GAAGA	1 cut(s)	460
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	443, 452
MmeI	TCCRAC	2 cut(s)	148, 334
MnlI	CCTC	2 cut(s)	109, 246
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	2 cut(s)	278, 336
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	253, 262, 371
NdeI	CATATG	1 cut(s)	91
NlaIII	CATG	4 cut(s)	71, 131, 184, 293
NlaIV	GGNNCC	2 cut(s)	209, 295
NmeAIII	GCCGAG	1 cut(s)	440
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	2 cut(s)	443, 452
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
PpsI	GAGTC	2 cut(s)	443, 452
Ppu21I	YACGTR	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	209, 295
PspPI	GGNCC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	278, 336
SatI	GCNGC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	443, 452
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	6 cut(s)	21, 109, 120, 196, 373, 412
SfaNI	GCATC	3 cut(s)	76, 301, 401
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	185
SseBI	AGGCCT	1 cut(s)	256
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	256
TaiI	ACGT	2 cut(s)	109, 412
TaqI	TCGA	1 cut(s)	435
TasI	AATT	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	278, 336
Tru9I	TTAA	2 cut(s)	278, 336
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	278, 315
VpaK11BI	GGWCC	1 cut(s)	121
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.